RNA id: TU1068770


Basic Information

Item Value
RNA id TU1068770
length 1325
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G937082
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 5138000 ~ 5187878 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caacaTTTTTATTTATCAGACTGTATGCCATTCTGTTTCTTTAACAAAAAGGGCTTCTTGAATTCATTCCCATCTGTTTGGAATCACTAGCAGAGAAACTCCATGCACCTGCCTTACTTTCCCTCAGTCTGTATCAGAGGTTTTAGTTACATcgttcttctttgtcttcttttCCAGTAGTTGAAACGGCTTCATTCCCCCTTTTGTTTCCTTTCCTTCGTCAACACAAGGGTTACTAGACTGGATAGGATTCATTGCTTTCCCACCACAGTGCTTTAACCTACCAGTTTGTGTGTCCCAAATTACCATTcttattcccaatatagtgctccacttttgaccagaggtgTATTGGTagtggtcgaaagtagtgcactacagaaggaatagggttccatttgagtcccagacattctctcaggacactGGCAGTGAGAACGCAGGACAGGGAACAAGGATAGGAAgccattttagagaattttgagttttaattTGCTTTTCAAGCCTTTTGCGTTGTTggtgctgtaaaaaaaaaaaaaaaaaaaaaaaattggggccCTGTTTTACGTCTCTGGTTAATGCATCCTTCCTGTGGTCTTTTCTTTCCCTGAAACCATCGCTGATCTAACGTGGTTGGATAGGGCTGTTTACCCCAATCCAGCCAATGGTAGGATCAGTGGTCACTCTATGTGGAGGGAGGAAGCTATTATTGaagtgcatcctaaatggcaccctattgcatacatacatatacacacatatatatatatattagtgcactacttatgacctcAGCCCATTGTCtctgtacactatatagggaatagggtgctatgacCACTGcccatatgtatgtgtatgtgtgtgtgtcatttgggATACAACTGTGGAGTTATGTTGTTTTTAGAGATAATCTAGAGTGCCTACCAAGGCACTGAAAGGATATGTTCCCTATATCTCTCTTTTCAGATCTACATGAAGGGCTGTGAgctaaatggcaccatatttccctatatagtgcactactttttgactaAGGCTCaggtgtaaagtagtgcactatataaagacaatagggtgccatttggggatgTAGACATTGTATTTATGTCTCCTTTGAGCATGTCCACGAGAATATAATTTTGTTGTTGAAGACATTATGGataaagaaatgttttgttgttctGTTTTTATGCCCGTTTTTATTTTAACTGAACGTGCCAAATGCTAAGTTCTCCTCATGACACAGGGCATAAAACCCACCCTGGCTCTTTACTGTTGTTCAACATGCCCACTCGTTGCCATTAAACATTATTTACACAAAA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1068793 lncRNA upstream 26494 5159620 ~ 5160038 (+) True G937104
TU1068787 lncRNA upstream 33361 5148453 ~ 5153171 (+) True G937098
TU1068789 lncRNA upstream 33717 5149463 ~ 5152815 (+) True G937100
TU1068749 lncRNA upstream 100540 5081064 ~ 5085992 (+) True G937071
TU1068711 lncRNA upstream 181866 5003968 ~ 5004666 (+) True G937038
TU1068876 lncRNA downstream 110361 5298239 ~ 5306964 (+) True G937182
TU1068885 lncRNA downstream 119201 5307079 ~ 5308063 (+) True G937190
TU1068892 lncRNA downstream 162585 5350463 ~ 5350802 (+) True G937197
TU1068806 lncRNA downstream 239343 5427221 ~ 5518848 (+) True LOC110536532
TU1068946 lncRNA downstream 316639 5504517 ~ 5506154 (+) True G937236
XM_036934610.1 mRNA upstream 1725 5168887 ~ 5184807 (+) False LOC100136147
XM_036934611.1 mRNA upstream 1725 5168890 ~ 5184807 (+) False LOC100136147
NM_001124437.1 mRNA upstream 1785 5168976 ~ 5184747 (+) True LOC100136147
XR_005034537.1 mRNA upstream 222868 4959044 ~ 4963664 (+) True LOC118937293
XM_036934694.1 mRNA upstream 230347 4819745 ~ 4956185 (+) False eya1
XM_036934699.1 mRNA downstream 5303 5193181 ~ 5429446 (+) False LOC110536532
XM_036934700.1 mRNA downstream 5303 5193181 ~ 5429446 (+) False LOC110536532
XM_036934701.1 mRNA downstream 244448 5432326 ~ 5439359 (+) True LOC110535182
XM_036934708.1 mRNA downstream 840782 6028660 ~ 6038322 (+) True LOC110535189
XM_036934707.1 mRNA downstream 853964 6041842 ~ 6098398 (+) False LOC110536599
TU1068784 other upstream 41967 5143317 ~ 5144565 (+) True G937096
TU1068724 other upstream 158387 5020160 ~ 5028145 (+) True G937051
TU1068725 other upstream 164919 5019905 ~ 5021613 (+) False G937051
TU1067343 other upstream 1204334 3981851 ~ 3982198 (+) True G935977
TU1067342 other upstream 1205381 3980771 ~ 3981151 (+) True G935976
TU1068947 other downstream 316826 5504704 ~ 5505329 (+) True G937237
TU1069683 other downstream 933706 6121584 ~ 6122269 (+) False G937889
TU1070683 other downstream 1831273 7019151 ~ 7021424 (+) False G938723
TU1070682 other downstream 1833198 7021076 ~ 7021424 (+) True G938723
TU1071428 other downstream 2386474 7574352 ~ 7574909 (+) True G939408

Expression Profile