RNA id: TU1068793


Basic Information

Item Value
RNA id TU1068793
length 299
lncRNA type intronic
GC content 0.44
exon number 3
gene id G937104
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 5159620 ~ 5160038 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACAGCCAATCAGTTTCATCTAACAGGTGAGTAGAGCACACACAGCCAATCAGGTTCATCTAACAGGTGAGTAGAGCACACACAGCCAATCAGGTTCATCTAACAGGTGAGTAGAGCACTCACAGCCAATCAGTTTCATCTAACAGGTGAgcactccctccctgtcctgaaCAATTCCATAACCTACTGTAGCAACTAGTTCTGTTGGATGTGTCAGTTTTCAAACTGAAGCCTTTTCAAACAATCCCAACAACCATATGGCAAGTTATTCTGAATTCAAGGTCAAGAGTGTAAGGGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1068787 lncRNA upstream 6449 5148453 ~ 5153171 (+) True G937098
TU1068789 lncRNA upstream 6805 5149463 ~ 5152815 (+) True G937100
TU1068749 lncRNA upstream 73628 5081064 ~ 5085992 (+) True G937071
TU1068711 lncRNA upstream 154954 5003968 ~ 5004666 (+) True G937038
TU1068559 lncRNA upstream 317660 4838840 ~ 4841960 (+) True G936917
TU1068765 lncRNA downstream 26127 5186165 ~ 5187878 (+) False G937082
TU1068770 lncRNA downstream 26494 5186532 ~ 5187878 (+) True G937082
TU1068876 lncRNA downstream 138201 5298239 ~ 5306964 (+) True G937182
TU1068885 lncRNA downstream 147041 5307079 ~ 5308063 (+) True G937190
TU1068892 lncRNA downstream 190425 5350463 ~ 5350802 (+) True G937197
XR_005034537.1 mRNA upstream 195956 4959044 ~ 4963664 (+) True LOC118937293
XM_036934692.1 mRNA upstream 203435 4819745 ~ 4956185 (+) False eya1
XM_036934610.1 mRNA downstream 8849 5168887 ~ 5184807 (+) False LOC100136147
XM_036934611.1 mRNA downstream 8852 5168890 ~ 5184807 (+) False LOC100136147
NM_001124437.1 mRNA downstream 8938 5168976 ~ 5184747 (+) True LOC100136147
XM_036934699.1 mRNA downstream 33143 5193181 ~ 5429446 (+) False LOC110536532
XM_036934700.1 mRNA downstream 33143 5193181 ~ 5429446 (+) False LOC110536532
TU1068784 other upstream 15055 5143317 ~ 5144565 (+) True G937096
TU1068724 other upstream 131475 5020160 ~ 5028145 (+) True G937051
TU1068725 other upstream 138007 5019905 ~ 5021613 (+) False G937051
TU1067343 other upstream 1177422 3981851 ~ 3982198 (+) True G935977
TU1067342 other upstream 1178469 3980771 ~ 3981151 (+) True G935976
TU1068947 other downstream 344666 5504704 ~ 5505329 (+) True G937237
TU1069683 other downstream 961546 6121584 ~ 6122269 (+) False G937889
TU1070683 other downstream 1859113 7019151 ~ 7021424 (+) False G938723
TU1070682 other downstream 1861038 7021076 ~ 7021424 (+) True G938723
TU1071428 other downstream 2414314 7574352 ~ 7574909 (+) True G939408

Expression Profile