RNA id: TU1069681


Basic Information

Item Value
RNA id TU1069681
length 313
lncRNA type antisense_over
GC content 0.53
exon number 2
gene id G937888
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 6121004 ~ 6121534 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGGAGCTGTATGAGACAGTACAGTGGACTACGTAAGGGGCCCCATAGACCTGtcgttctggtcaaaagtagtgcactacctagggaacaTGGAGTGAACTCACCTGAAATAGGAGCTGCATGTGGCCAGGACCATCTTGTGACAGGGGAATTCGTTGCCTTCCACCAGCAGCACCACGTCAGTCAGTAACTTCTGTTCGTAAAACAGCTTGAGCTGCTCCAGCAGGGAGACGGCGTAGTCCCTGTTGACTGGCCTACGCTCATTGAGATCCGACATCGTTGCATCACATGAAtcgtcccccctccctctccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1069626 lncRNA upstream 7702 6109783 ~ 6113302 (+) True G937849
TU1069620 lncRNA upstream 22606 6098126 ~ 6098398 (+) True LOC110536599
TU1069619 lncRNA upstream 22991 6097607 ~ 6098013 (+) False LOC110536599
TU1069666 lncRNA upstream 32277 6086737 ~ 6088727 (+) True G937877
TU1069599 lncRNA upstream 118395 6002409 ~ 6002609 (+) True G937822
TU1069682 lncRNA downstream 50 6121584 ~ 6122269 (+) False G937889
TU1069684 lncRNA downstream 50 6121584 ~ 6122269 (+) False G937889
TU1069685 lncRNA downstream 50 6121584 ~ 6122269 (+) True G937889
TU1069690 lncRNA downstream 11915 6133449 ~ 6134025 (+) True G937892
TU1069628 lncRNA downstream 26893 6148427 ~ 6148791 (+) True G937851
XM_036934707.1 mRNA upstream 22606 6041842 ~ 6098398 (+) False LOC110536599
XM_036934706.1 mRNA upstream 22606 6041856 ~ 6098398 (+) False LOC110536599
XM_036934708.1 mRNA upstream 82682 6028660 ~ 6038322 (+) True LOC110535189
XM_036934701.1 mRNA upstream 681645 5432326 ~ 5439359 (+) True LOC110535182
XM_036934700.1 mRNA upstream 691558 5193181 ~ 5429446 (+) False LOC110536532
XM_021620046.2 mRNA downstream 5841 6127375 ~ 6139717 (+) False LOC110535186
XM_036934710.1 mRNA downstream 6728 6128262 ~ 6139717 (+) False LOC110535186
XM_036934711.1 mRNA downstream 6729 6128263 ~ 6139703 (+) False LOC110535186
XM_036934712.1 mRNA downstream 6729 6128263 ~ 6139717 (+) True LOC110535186
XM_036934735.1 mRNA downstream 20181 6141715 ~ 6148083 (+) True LOC110535188
TU1068947 other upstream 615675 5504704 ~ 5505329 (+) True G937237
TU1068784 other upstream 976439 5143317 ~ 5144565 (+) True G937096
TU1068724 other upstream 1092859 5020160 ~ 5028145 (+) True G937051
TU1068725 other upstream 1099391 5019905 ~ 5021613 (+) False G937051
TU1067343 other upstream 2138806 3981851 ~ 3982198 (+) True G935977
TU1069683 other downstream 50 6121584 ~ 6122269 (+) False G937889
TU1070683 other downstream 897617 7019151 ~ 7021424 (+) False G938723
TU1070682 other downstream 899542 7021076 ~ 7021424 (+) True G938723
TU1071428 other downstream 1452818 7574352 ~ 7574909 (+) True G939408
TU1071586 other downstream 1698986 7820520 ~ 7823317 (+) True G939544

Expression Profile