RNA id: TU1069628


Basic Information

Item Value
RNA id TU1069628
length 365
lncRNA type antisense_over
GC content 0.38
exon number 1
gene id G937851
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 6148427 ~ 6148791 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aagagatggagggggaggagcctACAGCCATAGATGAGTATGGACGAAATGGCCGGGGTCACTTTGGAACAATGAAAGAACTTAACCAGACCTGAGTTATGAAACCAAACCATTATGGGTTAAAAACTATGACTGTTCTAAAGCGATGTGATCTAGGTGAAGACTATGAGATGTCATGTTGATCACCATTATCACAGGATAGTCAAAtggcaactttttttttttttcaataacacCATGACTAAACAGTTTTGAAAACTAAGCCCACGAAAACGGCATGAAGAACAATGGATCATAATACTGTTCACATTATATACTTTGATCCCCAAAACATACCTACAGATAAATCATTTAGTTCAGATTAG

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1069690 lncRNA upstream 14402 6133449 ~ 6134025 (+) True G937892
TU1069682 lncRNA upstream 26158 6121584 ~ 6122269 (+) False G937889
TU1069684 lncRNA upstream 26158 6121584 ~ 6122269 (+) False G937889
TU1069685 lncRNA upstream 26158 6121584 ~ 6122269 (+) True G937889
TU1069681 lncRNA upstream 26893 6121004 ~ 6121534 (+) True G937888
TU1069697 lncRNA downstream 18313 6167104 ~ 6167691 (+) True G937899
TU1069723 lncRNA downstream 72491 6221282 ~ 6222049 (+) True G937923
TU1069725 lncRNA downstream 75988 6224779 ~ 6225211 (+) True G937925
TU1069730 lncRNA downstream 86447 6235238 ~ 6236139 (+) True G937930
TU1069756 lncRNA downstream 125275 6274066 ~ 6274616 (+) True G937942
XM_036934735.1 mRNA upstream 344 6141715 ~ 6148083 (+) True LOC110535188
XM_021620046.2 mRNA upstream 8710 6127375 ~ 6139717 (+) False LOC110535186
XM_036934710.1 mRNA upstream 8710 6128262 ~ 6139717 (+) False LOC110535186
XM_036934712.1 mRNA upstream 8710 6128263 ~ 6139717 (+) True LOC110535186
XM_036934711.1 mRNA upstream 8724 6128263 ~ 6139703 (+) False LOC110535186
XM_036934733.1 mRNA downstream 104191 6252982 ~ 6283758 (+) False LOC110535195
XM_036934732.1 mRNA downstream 113558 6262349 ~ 6283758 (+) False LOC110535195
XM_036934734.1 mRNA downstream 113558 6262349 ~ 6283758 (+) False LOC110535195
XR_005034540.1 mRNA downstream 113558 6262349 ~ 6284707 (+) False LOC110535195
XM_036934738.1 mRNA downstream 148914 6297705 ~ 6320962 (+) False LOC110535194
TU1069683 other upstream 26158 6121584 ~ 6122269 (+) False G937889
TU1068947 other upstream 643098 5504704 ~ 5505329 (+) True G937237
TU1068784 other upstream 1003862 5143317 ~ 5144565 (+) True G937096
TU1068724 other upstream 1120282 5020160 ~ 5028145 (+) True G937051
TU1068725 other upstream 1126814 5019905 ~ 5021613 (+) False G937051
TU1070683 other downstream 870360 7019151 ~ 7021424 (+) False G938723
TU1070682 other downstream 872285 7021076 ~ 7021424 (+) True G938723
TU1071428 other downstream 1425561 7574352 ~ 7574909 (+) True G939408
TU1071586 other downstream 1671729 7820520 ~ 7823317 (+) True G939544
TU1071752 other downstream 1991475 8140266 ~ 8140583 (+) True G939690

Expression Profile