RNA id: TU1069725



Basic Information


Item Value
RNA id TU1069725
length 310
lncRNA type intronic
GC content 0.51
exon number 2
gene id G937925
representative True

Chromosome Information


Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 6224779 ~ 6225211 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CACATGAGCTGGGCTAATCTATCATCTACCACCAGCACATGAGCTGGGCTAATCTATCATCTACCACCAGCACATGAGCTGGGCTAATCTCCCATCTACCACCAGCACATGAGCTGGGCTAATCTCCCATCTACCACCAGCACATGAGCTGGGCTAATCTATCATCTACCACCAGCACATGAGCTGGGCTAATCTCCCATCTACCACCAGCACATGAGCTGGGCTAATCTATCATCTACCACCAGCACATGAGCTGGGCTAATCTATTATCTACCACCAGCACATGAGCTGGGCTAATCTCCCATCTACC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1069723 lncRNA upstream 2730 6221282 ~ 6222049 (+) True G937923
TU1069697 lncRNA upstream 57088 6167104 ~ 6167691 (+) True G937899
TU1069628 lncRNA upstream 75988 6148427 ~ 6148791 (+) True G937851
TU1069690 lncRNA upstream 90754 6133449 ~ 6134025 (+) True G937892
TU1069684 lncRNA upstream 102510 6121584 ~ 6122269 (+) False G937889
TU1069730 lncRNA downstream 10027 6235238 ~ 6236139 (+) True G937930
TU1069756 lncRNA downstream 48855 6274066 ~ 6274616 (+) True G937942
TU1069738 lncRNA downstream 58598 6283809 ~ 6498275 (+) True LOC110535195
TU1069762 lncRNA downstream 64984 6290195 ~ 6290678 (+) True G937948
TU1069768 lncRNA downstream 68516 6293727 ~ 6295153 (+) True G937952
XM_036934735.1 mRNA upstream 76696 6141715 ~ 6148083 (+) True LOC110535188
XM_021620046.2 mRNA upstream 85062 6127375 ~ 6139717 (+) False LOC110535186
XM_036934733.1 mRNA downstream 27771 6252982 ~ 6283758 (+) False LOC110535195
XM_036934732.1 mRNA downstream 37138 6262349 ~ 6283758 (+) False LOC110535195
XM_036934734.1 mRNA downstream 37138 6262349 ~ 6283758 (+) False LOC110535195
XR_005034540.1 mRNA downstream 37138 6262349 ~ 6284707 (+) False LOC110535195
XM_036934738.1 mRNA downstream 72494 6297705 ~ 6320962 (+) False LOC110535194
TU1069683 other upstream 102510 6121584 ~ 6122269 (+) False G937889
TU1068947 other upstream 719450 5504704 ~ 5505329 (+) True G937237
TU1068784 other upstream 1080214 5143317 ~ 5144565 (+) True G937096
TU1068724 other upstream 1196634 5020160 ~ 5028145 (+) True G937051
TU1068725 other upstream 1203166 5019905 ~ 5021613 (+) False G937051
TU1070683 other downstream 793940 7019151 ~ 7021424 (+) False G938723
TU1070682 other downstream 795865 7021076 ~ 7021424 (+) True G938723
TU1071428 other downstream 1349141 7574352 ~ 7574909 (+) True G939408
TU1071586 other downstream 1595309 7820520 ~ 7823317 (+) True G939544
TU1071752 other downstream 1915055 8140266 ~ 8140583 (+) True G939690

Expression Profile