RNA id: TU1069767



Basic Information


Item Value
RNA id TU1069767
length 703
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G937951
representative True

Chromosome Information


Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 6321070 ~ 6321981 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aggcAATTTCCTTGTGGGATTGTAAACGCTGGATGTCAGCTCAAGTGTAAAGGACCTTGTTTTTTCTTCCCAAGGTAGAGTCAGCAAAGCACAATATCAGTCCGACTTCTGCAACCACAATGCTAAACTTCTCTGCTgtttttgatttgatgattttacctttatttaattaggcaagtcagttaagaacaaattcatattttcaatgattgcctatgaacagtgggttaactgcctgttcaggggcagaacgacagagttgtaccttgtcagctcgggggtttgaacttgcaaccttccggttactagtccaatgctctaaccactaggctacctgccacctctacactctaaccactaggctacctgccgcctctacactctaaccactaggctacctgccactaggctacctggacCAAAGACTCCATACTATTTCTCCCTGATGTTTCGAAGATCCAAGCAACTATATTTGTGTAAACATTACGATTTATATTTCTGTAATGATATTTGTTAAAGGTGTTATGCAATATTTTGCCATTATTACAAAatcaactttttttttattttagaacATGGtgtttttacacttttttttaaatacgttTATCTGGATATTACTCTATTCTTATATTAATCTTAAAAACAGGTACTAATCTGTTATGTATTTCTTCTgtaaaatttaaaataaaatgatTTCAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1069771 lncRNA upstream 10930 6307819 ~ 6310140 (+) True G937955
TU1069768 lncRNA upstream 25917 6293727 ~ 6295153 (+) True G937952
TU1069762 lncRNA upstream 30392 6290195 ~ 6290678 (+) True G937948
TU1069756 lncRNA upstream 46454 6274066 ~ 6274616 (+) True G937942
TU1069730 lncRNA upstream 84931 6235238 ~ 6236139 (+) True G937930
TU1069782 lncRNA downstream 18983 6340964 ~ 6341310 (+) True G937966
TU1069789 lncRNA downstream 34651 6356632 ~ 6357043 (+) True G937973
TU1069794 lncRNA downstream 37437 6359418 ~ 6360293 (+) True G937975
TU1069804 lncRNA downstream 57619 6379600 ~ 6386395 (+) False LOC110536538
TU1069819 lncRNA downstream 69541 6391522 ~ 6391792 (+) True G937993
XM_036934738.1 mRNA upstream 108 6297705 ~ 6320962 (+) False LOC110535194
XM_036934739.1 mRNA upstream 108 6297706 ~ 6320962 (+) True LOC110535194
XR_005034540.1 mRNA upstream 36363 6262349 ~ 6284707 (+) False LOC110535195
XM_036934733.1 mRNA upstream 37312 6252982 ~ 6283758 (+) False LOC110535195
XM_036934732.1 mRNA upstream 37312 6262349 ~ 6283758 (+) False LOC110535195
LOC110536537 mRNA downstream 24026 6346007 ~ 6353351 (+) True LOC110536537
XM_036934740.1 mRNA downstream 57463 6379444 ~ 6480492 (+) False LOC110536538
XM_036934743.1 mRNA downstream 57463 6379444 ~ 6480492 (+) False LOC110536538
XM_036934742.1 mRNA downstream 57465 6379446 ~ 6480492 (+) False LOC110536538
LOC110536540 mRNA downstream 337447 6659428 ~ 6675322 (+) True LOC110536540
TU1069683 other upstream 198801 6121584 ~ 6122269 (+) False G937889
TU1068947 other upstream 815741 5504704 ~ 5505329 (+) True G937237
TU1068784 other upstream 1176505 5143317 ~ 5144565 (+) True G937096
TU1068724 other upstream 1292925 5020160 ~ 5028145 (+) True G937051
TU1068725 other upstream 1299457 5019905 ~ 5021613 (+) False G937051
TU1070683 other downstream 697170 7019151 ~ 7021424 (+) False G938723
TU1070682 other downstream 699095 7021076 ~ 7021424 (+) True G938723
TU1071428 other downstream 1252371 7574352 ~ 7574909 (+) True G939408
TU1071586 other downstream 1498539 7820520 ~ 7823317 (+) True G939544
TU1071752 other downstream 1818285 8140266 ~ 8140583 (+) True G939690

Expression Profile