RNA id: TU1069861


Basic Information

Item Value
RNA id TU1069861
length 553
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G938025
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 6482265 ~ 6485664 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTATTGACGGCGACCCTGGAGAGATTAgtgttaaatgccttgttcaatGGCACATCGGCACATTtgtcacctagtcagctcggggatttgaaccagcgacctttctgtTAACCGacctcttaactgctaggctacctgccacccctaaaaCTGTCTCTAACTCTATGGTCAATATTGCCTGTGTTGTGTTTCATTGTTCTCACTACCAAATCATTCTCCTGCAGTCCCACCCTGACAAGACACACACGTTACTGAACGTTGTGCAAATTGTCAGTTCACTGTCGTATCATTGAAACTGCTGAAGAAAGTCAAACACGGTCAAACTCCTGGACAGTAATTCTAGAAGGAACTGTCTGTGTTCAAAATGGTTTCAGTTGCTTTCCATGCGTGCTCTTATGAACGAAAGTATGTTGTTCTGCTCTACATAAAATAAACATGTCAATTTTCAGTCTTCACAATACCAATTTGTCGTTTGATGTTTTCTTTCAGTATTTCACACATCGTTTCGTTGCACTACGGGGGACTGATTCATCATCCATCCAATAACTGACGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1069858 lncRNA upstream 564 6480682 ~ 6481701 (+) True G938024
TU1069807 lncRNA upstream 5780 6476133 ~ 6476485 (+) True LOC110536538
TU1069852 lncRNA upstream 25275 6455603 ~ 6456990 (+) True G938019
TU1069805 lncRNA upstream 43416 6438172 ~ 6438849 (+) True G937986
TU1069840 lncRNA upstream 52412 6428330 ~ 6429853 (+) True G938008
TU1069875 lncRNA downstream 17025 6502689 ~ 6504091 (+) True G938038
TU1069885 lncRNA downstream 28567 6514231 ~ 6514587 (+) True G938045
TU1069909 lncRNA downstream 62467 6548131 ~ 6548763 (+) True G938069
TU1069932 lncRNA downstream 94300 6579964 ~ 6581867 (+) True G938089
TU1070296 lncRNA downstream 128436 6614100 ~ 6617787 (+) True G938358
XM_036934740.1 mRNA upstream 1773 6379444 ~ 6480492 (+) False LOC110536538
XM_036934743.1 mRNA upstream 1773 6379444 ~ 6480492 (+) False LOC110536538
XM_036934742.1 mRNA upstream 1773 6379446 ~ 6480492 (+) False LOC110536538
LOC110536537 mRNA upstream 128914 6346007 ~ 6353351 (+) True LOC110536537
XM_036934739.1 mRNA upstream 161303 6297706 ~ 6320962 (+) True LOC110535194
LOC110536540 mRNA downstream 173764 6659428 ~ 6675322 (+) True LOC110536540
XM_036934747.1 mRNA downstream 526684 7012348 ~ 7051404 (+) False LOC110535201
XM_036934749.1 mRNA downstream 885179 7370843 ~ 7427263 (+) False LOC110535202
XM_036934748.1 mRNA downstream 885185 7370849 ~ 7427263 (+) True LOC110535202
XM_036934750.1 mRNA downstream 961750 7447414 ~ 7502456 (+) True LOC110535203
TU1069683 other upstream 359996 6121584 ~ 6122269 (+) False G937889
TU1068947 other upstream 976936 5504704 ~ 5505329 (+) True G937237
TU1068784 other upstream 1337700 5143317 ~ 5144565 (+) True G937096
TU1068724 other upstream 1454120 5020160 ~ 5028145 (+) True G937051
TU1068725 other upstream 1460652 5019905 ~ 5021613 (+) False G937051
TU1070683 other downstream 533487 7019151 ~ 7021424 (+) False G938723
TU1070682 other downstream 535412 7021076 ~ 7021424 (+) True G938723
TU1071428 other downstream 1088688 7574352 ~ 7574909 (+) True G939408
TU1071586 other downstream 1334856 7820520 ~ 7823317 (+) True G939544
TU1071752 other downstream 1654602 8140266 ~ 8140583 (+) True G939690

Expression Profile