RNA id: TU1070296


Basic Information

Item Value
RNA id TU1070296
length 2078
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G938358
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 6614100 ~ 6617787 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atGTAAACACATTGATTCTCATTGCCAATAGGCTCAGGATAACTCCTCATAAGGTTGGCTAGTTGATATCTAGAGCTTAAATAGCCTAAATGATTAGTCACAGGAATACAGCCAATACAACCAGCTTGTTTAACAAACAGTAGGCCTATCACATGCTTGGGCATTCATAAACTTCAATATTAATTTGTTGCAGCCCAGACcggccttgatttcaacatccacggaccggaccaaatctgaaccaatcatggaCGTTTATGTTTTACAAGTTCAGACCAGCCTTGATCTGGCCCAAACATTtaactggaccaaatctgaatcAATCACAAACATCTATGTTTCACTAGTTTGAACagcacagtacattacagtacagtaaagaaaagtagagtacagtacaatatagtactgtggagcaacatagagtacagtacaatatagtactgtggagcacagtagagtacagtacaatatagtactgtggagcaacagtagagtacagtacaatatagtactgtggagcacagtagagtacaaccaaagatagtactgtggagcaacagtagagtacaaccaaagatagtactgtggagcaacagtagagtacaaccaaagatagtactgtgcagcaacagtagagtacagtacaatatagtactgtggagcaacagtagagtacaaccaaagatagtactgtggagcaacagtagagtacaaccaaagatagtactgtggagcaacagtagagtacaaccaaagatagtactgtggagcaacagtagagtacaaccaaagatagtactgtggagcaacagtagagtacagtacaatatagtactgtggagcaacagtagagtacaaccaaagatagtactgtggagcaacagtagagtacaaccaaagatagtactgtggagcaacagtagagtacaaccaaagatagtactgtggagcaacagtagagtacaaccaaagatagtactgtggagcaacagtagagtacaaccaaagatagtactgtggagcaacagtagagtacaaccaaagatagtactgtggagcaacagtagagtacaaccaaagatagtactgtggagcaacagtagagtacagtacaatatagtactgtggagcacagtagagtacaaccaAAGATAGTACTGCATGAAGATAGGCATAAACTGTTTCTCCGATAGAAATCTGCGATAACACTTGGCAGGATATGTCATGGCTATGTTGGCTATCTAAGCACCTGCACAGAAACATGTTATCGGGTATAACGGTCGTCTCATATCGAACTGCGAATGTGTAGGCCTTTCAAATCGTAGGCACTCATTCGGAATAAAGTTGATTTTGGCGAAAATTAAAACGGCAAAAAGAAAGGAAGAATTTTTCAATTCTCTTGCGAATTctcgcctctgggtttagaaactctgtggtacaacagtacagcacagtagagtacagttcagtataatgtactgtaccataatgtactgtaatgtacccTGTTCAAggaactttcattcagaacctaaaaTTAACCTAATTTCAACAATTTGAGAAAGACGTCAATACCAACTGACATACCTTTGTATACCTCCTCgtctgtatacctgcagacacaaaagtgagcagtacagtcatctgcacccaatagAGCTAGCCTTCATTATATTCTTATAGTGTAACgattgtcgtctggggaaggagaggaggaccaaggtgcagcgtggtaagtgttcatattatttaatgaaatatgcaacactagacaaaacaaacaaacaaaacaaacaaacaaacaaacaaacaaacaaacaaacaaacaaacaaacaaacaaacaaacaaacaaacagtcctgaaccgtgaaacaaaaacactaaacaggaaacaaccacccacaaaacacaatggaaaacaggctgcctaaatatggttctcaatcagggacaacgattgacagctgcctctgattgagaaccataccaggccaaacacagaaatagaaaatcatagacaaactaacatagacaacccacccaactcacgccctgaccatactaaaacaaaagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1069932 lncRNA upstream 32233 6579964 ~ 6581867 (+) True G938089
TU1069909 lncRNA upstream 65337 6548131 ~ 6548763 (+) True G938069
TU1069885 lncRNA upstream 99513 6514231 ~ 6514587 (+) True G938045
TU1069875 lncRNA upstream 110009 6502689 ~ 6504091 (+) True G938038
TU1069861 lncRNA upstream 128436 6482265 ~ 6485664 (+) True G938025
TU1070304 lncRNA downstream 5008 6622795 ~ 6669363 (+) True G938366
TU1070459 lncRNA downstream 144917 6762704 ~ 6762904 (+) True G938516
TU1070474 lncRNA downstream 154283 6772070 ~ 6773505 (+) False G938531
TU1070475 lncRNA downstream 154283 6772070 ~ 6773505 (+) False G938531
TU1070476 lncRNA downstream 154283 6772070 ~ 6773505 (+) True G938531
XM_036934740.1 mRNA upstream 133608 6379444 ~ 6480492 (+) False LOC110536538
XM_036934743.1 mRNA upstream 133608 6379444 ~ 6480492 (+) False LOC110536538
XM_036934742.1 mRNA upstream 133608 6379446 ~ 6480492 (+) False LOC110536538
LOC110536537 mRNA upstream 260749 6346007 ~ 6353351 (+) True LOC110536537
XM_036934739.1 mRNA upstream 293138 6297706 ~ 6320962 (+) True LOC110535194
LOC110536540 mRNA downstream 41641 6659428 ~ 6675322 (+) True LOC110536540
XM_036934747.1 mRNA downstream 394561 7012348 ~ 7051404 (+) False LOC110535201
XM_036934749.1 mRNA downstream 753056 7370843 ~ 7427263 (+) False LOC110535202
XM_036934748.1 mRNA downstream 753062 7370849 ~ 7427263 (+) True LOC110535202
XM_036934750.1 mRNA downstream 829627 7447414 ~ 7502456 (+) True LOC110535203
TU1069683 other upstream 491831 6121584 ~ 6122269 (+) False G937889
TU1068947 other upstream 1108771 5504704 ~ 5505329 (+) True G937237
TU1068784 other upstream 1469535 5143317 ~ 5144565 (+) True G937096
TU1068724 other upstream 1585955 5020160 ~ 5028145 (+) True G937051
TU1068725 other upstream 1592487 5019905 ~ 5021613 (+) False G937051
TU1070683 other downstream 401364 7019151 ~ 7021424 (+) False G938723
TU1070682 other downstream 403289 7021076 ~ 7021424 (+) True G938723
TU1071428 other downstream 956565 7574352 ~ 7574909 (+) True G939408
TU1071586 other downstream 1202733 7820520 ~ 7823317 (+) True G939544
TU1071752 other downstream 1522479 8140266 ~ 8140583 (+) True G939690

Expression Profile