RNA id: TU1070474



Basic Information


Item Value
RNA id TU1070474
length 838
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G938531
representative False

Chromosome Information


Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 6772070 ~ 6773505 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGACAAGGAAAAGGAGACATGAAAGAAGTAGGACAGGTTGCCAGAGAAGTGCAGATTCTAACTGATATATTCAATGTATTCTTGCTGCTTTTTCCTGCAGAATTTTGTTCTTCCTCCCTAATTGTGTCCCCTAAATGCCTACTCACAACCAATCATAATCTTTTCTGCTCTAAGAACATGTCTGAGTAAGTAAAACTCCCGTCAGCCTAGCATGTGGCATttattatttatgtattattttgCTCACCAAGagaggagtttttgtatggaggtcaatgagagtgtcGAAAATggtaaacaaaaaaaatgtaatggcaTATTTGctaatgtaacggatgtgaaacggctagcttagttagcggtggtgctaatgtaacggatgtgaaacggctagcttagttagcggtggtgctaatgtaacggatgtgaaacggctagcttagttagcgtgggcgctaaatagcgtttcaatcagtgacgtcacttgctctgagaccttgaagtagtagttccccttgctctgcaagggccgcggcttttgtggcgcgatgggtaacgatgcttcgagggtgactgttgatgtgtgcagaaggtccctagttcgcgcccgggtatgggcgaggggacggtctaaaattatactgttacattgatgctgttgacccggattactggttgctgcggaaaaaggaggaaggtcaaaaggggggtgagtgtaacggatgtgaaacggctagcttagttagcgtgggcgctaaatagcgtttcaatcagtgacgtcacttgctctgagaccttgaagtagtagttccccttgctctgcaagggccgtggcttt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1070459 lncRNA upstream 9166 6762704 ~ 6762904 (+) True G938516
TU1070304 lncRNA upstream 102707 6622795 ~ 6669363 (+) True G938366
TU1070296 lncRNA upstream 154283 6614100 ~ 6617787 (+) True G938358
TU1069932 lncRNA upstream 190203 6579964 ~ 6581867 (+) True G938089
TU1069909 lncRNA upstream 223307 6548131 ~ 6548763 (+) True G938069
TU1070652 lncRNA downstream 206049 6979554 ~ 6984573 (+) True G938694
TU1070692 lncRNA downstream 258153 7031658 ~ 7035460 (+) True G938732
TU1070617 lncRNA downstream 277227 7050732 ~ 7051408 (+) True LOC110535201
TU1070858 lncRNA downstream 289728 7063233 ~ 7063485 (+) True G938889
TU1070884 lncRNA downstream 308638 7082143 ~ 7082544 (+) True G938915
LOC110536540 mRNA upstream 96748 6659428 ~ 6675322 (+) True LOC110536540
XM_036934740.1 mRNA upstream 291578 6379444 ~ 6480492 (+) False LOC110536538
XM_036934743.1 mRNA upstream 291578 6379444 ~ 6480492 (+) False LOC110536538
XM_036934742.1 mRNA upstream 291578 6379446 ~ 6480492 (+) False LOC110536538
LOC110536537 mRNA upstream 418719 6346007 ~ 6353351 (+) True LOC110536537
XM_036934747.1 mRNA downstream 238843 7012348 ~ 7051404 (+) False LOC110535201
XM_036934749.1 mRNA downstream 597338 7370843 ~ 7427263 (+) False LOC110535202
XM_036934748.1 mRNA downstream 597344 7370849 ~ 7427263 (+) True LOC110535202
XM_036934750.1 mRNA downstream 673909 7447414 ~ 7502456 (+) True LOC110535203
XM_021622308.2 mRNA downstream 1189504 7963009 ~ 7969001 (+) True LOC110536543
TU1069683 other upstream 649801 6121584 ~ 6122269 (+) False G937889
TU1068947 other upstream 1266741 5504704 ~ 5505329 (+) True G937237
TU1068784 other upstream 1627505 5143317 ~ 5144565 (+) True G937096
TU1068724 other upstream 1743925 5020160 ~ 5028145 (+) True G937051
TU1068725 other upstream 1750457 5019905 ~ 5021613 (+) False G937051
TU1070683 other downstream 245646 7019151 ~ 7021424 (+) False G938723
TU1070682 other downstream 247571 7021076 ~ 7021424 (+) True G938723
TU1071428 other downstream 800847 7574352 ~ 7574909 (+) True G939408
TU1071586 other downstream 1047015 7820520 ~ 7823317 (+) True G939544
TU1071752 other downstream 1366761 8140266 ~ 8140583 (+) True G939690

Expression Profile