RNA id: TU1071407


Basic Information

Item Value
RNA id TU1071407
length 265
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G939387
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 7551984 ~ 7552248 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGATTAGGTAAcagataactgccaaaataatggaaacacaagtaaatgagggatacaaagtatattgaaagcaggtgcttcctgagttaattaagcaattaacatcccatcatgcttagggtcatgtataaaatgctgggcaggacattattttggctaccctGGCTATGCCCCTATAAGATGACAATGGCCCTATCCACAGGGCATGAATGGTCACTGTATGGTTttatgagcatgaaaacgatgtaatccatatgccatggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1071404 lncRNA upstream 1055 7550683 ~ 7550929 (+) True G939384
TU1071235 lncRNA upstream 111782 7439921 ~ 7440202 (+) True G939238
TU1071232 lncRNA upstream 115098 7436687 ~ 7436886 (+) True G939235
TU1071160 lncRNA upstream 224879 7325479 ~ 7327105 (+) False G939179
TU1071161 lncRNA upstream 225805 7325479 ~ 7326179 (+) True G939179
TU1071473 lncRNA downstream 99100 7651348 ~ 7651557 (+) True G939449
TU1071475 lncRNA downstream 101142 7653390 ~ 7653627 (+) True G939451
TU1071476 lncRNA downstream 101789 7654037 ~ 7654408 (+) True G939452
TU1071477 lncRNA downstream 103970 7656218 ~ 7656420 (+) True G939453
TU1071478 lncRNA downstream 104729 7656977 ~ 7657179 (+) True G939454
XM_036934750.1 mRNA upstream 49528 7447414 ~ 7502456 (+) True LOC110535203
XM_036934749.1 mRNA upstream 124721 7370843 ~ 7427263 (+) False LOC110535202
XM_036934748.1 mRNA upstream 124721 7370849 ~ 7427263 (+) True LOC110535202
XM_036934747.1 mRNA upstream 500580 7012348 ~ 7051404 (+) False LOC110535201
LOC110536540 mRNA upstream 876662 6659428 ~ 6675322 (+) True LOC110536540
XM_021622308.2 mRNA downstream 410761 7963009 ~ 7969001 (+) True LOC110536543
XM_021620072.1 mRNA downstream 417679 7969927 ~ 7971811 (+) True LOC110535207
XR_005034786.1 mRNA downstream 619624 8171872 ~ 8174025 (+) True LOC110536601
XM_036936611.1 mRNA downstream 622545 8174793 ~ 8175785 (+) True LOC118937436
XM_021620079.2 mRNA downstream 643359 8195607 ~ 8226038 (+) False LOC110535212
TU1070683 other upstream 530560 7019151 ~ 7021424 (+) False G938723
TU1070682 other upstream 530560 7021076 ~ 7021424 (+) True G938723
TU1069683 other upstream 1429715 6121584 ~ 6122269 (+) False G937889
TU1068947 other upstream 2046655 5504704 ~ 5505329 (+) True G937237
TU1068784 other upstream 2407419 5143317 ~ 5144565 (+) True G937096
TU1071428 other downstream 22104 7574352 ~ 7574909 (+) True G939408
TU1071586 other downstream 268272 7820520 ~ 7823317 (+) True G939544
TU1071752 other downstream 588018 8140266 ~ 8140583 (+) True G939690
TU1072090 other downstream 644120 8196368 ~ 8379328 (+) True LOC110535212
TU1072199 other downstream 822258 8374506 ~ 8377928 (+) True G940102

Expression Profile