RNA id: TU1071512


Basic Information

Item Value
RNA id TU1071512
length 1593
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G939487
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 7704884 ~ 7706739 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTTATTCCATAAAATATGCATTCTGTTgacattttacacacacacacattgcaaagTACTGGCATCTCCGCCCCGAGAAAATGGCTGCAATAGAGTGATGATTAAAGTATTGCGTAAGTGTCTACATCTCTACTCTTTCTAAACGTTGGCAATATGAACACATTTGATATCacaaaaaataacaaacaaacaaaaactctTAAGAGACAAACAGGTTTAATACTACAAAGACccttggagaaaaaaaaatgacGTGCTGCTTCAAAGCTGCCTCGATAATACTGTAGAACGACGGAGACAACACTTCCTGTTGCGTAGGCATAgaaacatcatcaaatcaaacgGACAGGACAAATACAATACATTctggataaaaaataaattgtcATCATGCAAGAATAtaacatcaaataaaataaaaaagaggcACATAGTGAATCACGTTTCAATCCATGTCTTATGCATATCAAATATAGAATATTTTCAGAATAATTATTATCAACATTACAGAGTTATTGGATTTGCTTTCTATAGGAACTATATACAAGGCATATTGTCCCACGTTTGTTTTACCCCACTGCTGGGTAAAGTGATGATTGtcattttcattaaaaacatggCTGTTGTTCCTGTTATTTTATTAAATATATCTTATCTACTCTAAAGGAATAACGGGAATCCCTTTTTGTGTCTTTTCAGCTTATAGAGTGGGGGGGATGCTTGTCTTCCAGCTGTTTGACGTTCAGAATGTCTCAGTCTGCAACTTCCAACTCCTTCTCTATTTACAATAGTACAAATGCAAAAcctggatagaggagaggagaggagagggagaggggaggagaggggaggagagggagaggggaggagagggagaggggagggagaggggaggagagggagaggggaggagaaggagaggggaggagaggggaggagaagtgaggaagaggagaagtgGGCGAGGGAAAAGCtaaggaggacacacacacacaaacacacacacacacacacacacacacacacacacacacacacccctccacagcgttagaggaggagagagctacTGGATACAAAACACTGTGTAATAAAAAATGAATCCTCCCTGTCACGATATATAGAGAGTTCTATGGAACCAAAGCTGGAATGTGATTGTGTCTCCCCTGTCATTGGAACAAGATGAATCTCATAGCTTCTCGTCTATGATTGACACTTGTGCAGTAGAGTTTATAGGGTTGATGGTCAAGGCTTTTACAGGATGATGCTTCCTGCCATGCAATGACCTGGGAGAGGGTCCCTTAGAATAGTCCACAATACACCAGGCCTCGTGCCACCAGGGCGTGGCTGGCTACTGGGGACTAGCTAGGCCTCGGCTATGCCTGGGGCTAGAATGAGGACGAGGCCCAAGGCGAGGCAgaggaagatgggcagggaggAGGCCGAGGAGCTGGGGTATCCCGTGGACCTGATGGTGGAGATGGAGACGTCGGAGGTGAGGAAAGCAGACAGAGGCACGTGGGAGACCAGGGTGGGGCTGCCGTAGTTGATGAGTGAGTCGATCTTCTCCGCCTCCATGCTGCAGGCTTCA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1071503 lncRNA upstream 13054 7690501 ~ 7691830 (+) True G939479
TU1071502 lncRNA upstream 14678 7689851 ~ 7690206 (+) True G939478
TU1071501 lncRNA upstream 15776 7688821 ~ 7689108 (+) True G939477
TU1071500 lncRNA upstream 16332 7688253 ~ 7688552 (+) True G939476
TU1071496 lncRNA upstream 21034 7683632 ~ 7683850 (+) True G939472
TU1071521 lncRNA downstream 12568 7719307 ~ 7720088 (+) True G939493
TU1071542 lncRNA downstream 50210 7756949 ~ 7759263 (+) True G939510
TU1071554 lncRNA downstream 68176 7774915 ~ 7790418 (+) True G939518
TU1071573 lncRNA downstream 101709 7808448 ~ 7810033 (+) True G939535
TU1071582 lncRNA downstream 109050 7815789 ~ 7818889 (+) True G939542
XM_036934750.1 mRNA upstream 202428 7447414 ~ 7502456 (+) True LOC110535203
XM_036934749.1 mRNA upstream 277621 7370843 ~ 7427263 (+) False LOC110535202
XM_036934748.1 mRNA upstream 277621 7370849 ~ 7427263 (+) True LOC110535202
XM_036934747.1 mRNA upstream 653480 7012348 ~ 7051404 (+) False LOC110535201
LOC110536540 mRNA upstream 1029562 6659428 ~ 6675322 (+) True LOC110536540
XM_021622308.2 mRNA downstream 256270 7963009 ~ 7969001 (+) True LOC110536543
XM_021620072.1 mRNA downstream 263188 7969927 ~ 7971811 (+) True LOC110535207
XR_005034786.1 mRNA downstream 465133 8171872 ~ 8174025 (+) True LOC110536601
XM_036936611.1 mRNA downstream 468054 8174793 ~ 8175785 (+) True LOC118937436
XM_021620079.2 mRNA downstream 488868 8195607 ~ 8226038 (+) False LOC110535212
TU1071428 other upstream 129975 7574352 ~ 7574909 (+) True G939408
TU1070683 other upstream 683460 7019151 ~ 7021424 (+) False G938723
TU1070682 other upstream 683460 7021076 ~ 7021424 (+) True G938723
TU1069683 other upstream 1582615 6121584 ~ 6122269 (+) False G937889
TU1068947 other upstream 2199555 5504704 ~ 5505329 (+) True G937237
TU1071586 other downstream 113781 7820520 ~ 7823317 (+) True G939544
TU1071752 other downstream 433527 8140266 ~ 8140583 (+) True G939690
TU1072090 other downstream 489629 8196368 ~ 8379328 (+) True LOC110535212
TU1072199 other downstream 667767 8374506 ~ 8377928 (+) True G940102
TU1072200 other downstream 673108 8379847 ~ 8381580 (+) False LOC110536544

Expression Profile