RNA id: TU1071659


Basic Information

Item Value
RNA id TU1071659
length 292
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G939607
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 7974268 ~ 7974559 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcagctgtacatagtcttatcggtaaatagcccacccatttttacctacctcatccccatactgtttttatttatttacttttctgctcttttgcacaccaatatctctacctgtacatgaccatctgatcatttatcactccagtgtttatctgcaaaattgtaattattcgcctacctcctcatgccttttgcacacaatgtatatagactctctttttttcctactgtgttactgacttgttaattgtttactccatgtgtaactctgtgttgttgtttgtgtcgaatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1071628 lncRNA upstream 59951 7913971 ~ 7914317 (+) True G939580
TU1071582 lncRNA upstream 155379 7815789 ~ 7818889 (+) True G939542
TU1071573 lncRNA upstream 164235 7808448 ~ 7810033 (+) True G939535
TU1071554 lncRNA upstream 183850 7774915 ~ 7790418 (+) True G939518
TU1071542 lncRNA upstream 215005 7756949 ~ 7759263 (+) True G939510
TU1071661 lncRNA downstream 1180 7975739 ~ 7979846 (+) False G939608
TU1071662 lncRNA downstream 1180 7975739 ~ 7979846 (+) True G939608
TU1071674 lncRNA downstream 17602 7992161 ~ 7992439 (+) True G939619
TU1071685 lncRNA downstream 35925 8010484 ~ 8010832 (+) True G939630
TU1071686 lncRNA downstream 44243 8018802 ~ 8019291 (+) True G939631
XM_021620072.1 mRNA upstream 2457 7969927 ~ 7971811 (+) True LOC110535207
XM_021622308.2 mRNA upstream 5267 7963009 ~ 7969001 (+) True LOC110536543
XM_036934750.1 mRNA upstream 471812 7447414 ~ 7502456 (+) True LOC110535203
XM_036934749.1 mRNA upstream 547005 7370843 ~ 7427263 (+) False LOC110535202
XM_036934748.1 mRNA upstream 547005 7370849 ~ 7427263 (+) True LOC110535202
XR_005034786.1 mRNA downstream 197313 8171872 ~ 8174025 (+) True LOC110536601
XM_036936611.1 mRNA downstream 200234 8174793 ~ 8175785 (+) True LOC118937436
XM_021620079.2 mRNA downstream 221048 8195607 ~ 8226038 (+) False LOC110535212
XM_036936634.1 mRNA downstream 319787 8294346 ~ 8337640 (+) True LOC118937462
XM_036934763.1 mRNA downstream 406811 8381370 ~ 8497020 (+) False LOC110536544
TU1071586 other upstream 150951 7820520 ~ 7823317 (+) True G939544
TU1071428 other upstream 399359 7574352 ~ 7574909 (+) True G939408
TU1070683 other upstream 952844 7019151 ~ 7021424 (+) False G938723
TU1070682 other upstream 952844 7021076 ~ 7021424 (+) True G938723
TU1069683 other upstream 1851999 6121584 ~ 6122269 (+) False G937889
TU1071752 other downstream 165707 8140266 ~ 8140583 (+) True G939690
TU1072090 other downstream 221809 8196368 ~ 8379328 (+) True LOC110535212
TU1072199 other downstream 399947 8374506 ~ 8377928 (+) True G940102
TU1072200 other downstream 405288 8379847 ~ 8381580 (+) False LOC110536544
TU1072364 other downstream 464921 8439480 ~ 8439775 (+) True G940247

Expression Profile