RNA id: TU1072199


Basic Information

Item Value
RNA id TU1072199
length 2613
RNA type TUCP
GC content 0.45
exon number 3
gene id G940102
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 8374506 ~ 8377928 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acccaccctcgtcacaccctgacctgaccaaaataatacagaaaacatagataactaaggtcagggcgtgacagatacaGTCTGTCACTTCATGATGGGTCGACTTTGTGATCATATTACCTTATTTGGGCATGAGGAAGGATAAACGTATTAATTGTCTGTCTAATGTACATCGGATTGTTAAGAGCATTGGTGAACAcagcacacactcatacacacactctctcacacacacacacacacacattcactctcacactcatacacacacacacacacactcacacactctctcttacacacacacacacacacattcactctaacactcacactcacactcacactcacacacacacacacactcacacactctctcttacacacacacacacacacattcactctaacactcacactcacactcacactcacacacacactcacacactctctcttacacacacacacacacacattcactctaacactcacactcacactcacacacacacacactcacacactctctcttacacacacacacacacacattcacactcatacacacacacacacacacattcactctaacactcacactcacacacacatcgaGGGTGAGAGCCAGCTGGTGGGTGTGAGGTGACCGCATACAGTTTTCCCTTGTCTGTGTGGGGATTACGGAGCGGTCCAATCCCCTCCATGGGCCACTCTCCTGTGGTGTGATGGCTCAGAGATCAATGACGGCTAGACTGAACACTCACTCGCGTGTCCACAACACAGTACTATATATAGTTTGCAGAGGCTGTCGCCAACCTAGCTAACCCTGTGTGTCAACGCCAACCCAGCGCCAGTCACTGACTACATACCCAGGTGAGGGTAAGGACATGGGGCGGGGCAGGGCAGAGCTAGGATAGGGTTAAGAAGAAGGGAACATTTGACTTGAAGGTGCCCTGTAAGTTTTGAGAAGGAGCGTTCCGTGTGTACTGTAGTCATGTTGAATGGTGTGTCTTTTGGGTGGGGTAATCAGTTACAACCTTGttgattctttaaaaaaaatgttaattcGTCAAAACAAAATGGATTCCTGCTTTCTAACGACAGGGTCACTGCTGAGCTGCTTAAACTATGGTACTGAAATATACACAGGGTCACTGCTGAGCTGCTTAAACTATAGTACTGAAATATACACAGGGTCACTGCTGAGCTGATTAAACTACAGTACTGAAATATACACAGGGTCACTGCTGAGCTGCTTAATCTACAGTACTGAAATGTACACAGGGTCACTGCTGAGCTGATTCAACTACAGTACTGAAATATACACAGGGTCACTGCTGAGCTGATTCAACTACAGTACTGAAATATACACAGGGTCACTGCTGAGCTGATTAAACTACAGTACTGAAATATACACAGGGTCACTGCTGAGCTGCTTAATCTACAGTACTGAAATATACACAGGGTCACTGCTGAGCTGCTTAATCTACAGTACTGAAATATACACAGGGTCACTGCTGAGCTGCTTAAACTATAGTACTGAAATATACACAGGGTCACTGCTGAGCTGCTTAAACTACAGTACTGAAATATACACAGGGTCACTGCTGAGCTGATTAAACTACAGTACTGAAATATACACAGGGTCACTGCTGAGCTGATTAAACTACAGTACTGAAATATACACAGGGTCACTGATGACATTCAAAATAGGAGTTAAAGCACAATCAACACGTTTGCTTTTCATTCAATTCAACTCTACCAAAAGTTATATCATTAAACCTTACTGAAGCagtcatttttaattaattcCTAGTTAAACAGTCATTGTTTGCGCATCTACTGAAACAGTCATTGTATTCATTCCTACTTAAAcagggcgaatgtcgtgccttaGATACCAACACAACaactctcatttctctctcctccaatttctccaTCAACTTACTGacggtctctgactctctccgttcactctcctccaatttctccaTGTTCTTCCAGATTGGCTCTGGCTCACTCCTCAGCTCCGCCGACCACCCTGTGTTCTCCCCCCTAAAAAAATAATTTGGGGCTGTTTTTTGGGGCTTTCGTTGTGCCCGCGAACCCCGGAGTTGTCTcagtcctcccttctctccttgcgTCTGCTTCCAAGGAAGGCTTTCGTCTCCTGCCattatttcctcccaagtccaggatgtcTTCTCCTCCttgatctcctcccaagtccaggatgtcTTCTCCTCCTTGATCTCCTCTCAAGCCCAGGATACCTTCTCCTCCTTgttctcctcccaagtccaggatatcCTCTCCTCCTTGTTCTTCTCCCAAGCCCAGGATACCttctcctcctgggcacgctgcttggtcctgttgttgtgggatcttctgtcacgatcgtcgtaagaacattcggaccaaagcgcagcgtgaaatCGGTTCGACATTTTTATTATAAGTGAACCgcacaaaaaaaacaataaacaataaacgaTACGTGACGctatggagtgctcacaggcaactacacaaaaacaagatcccacaaaacaccgtggggaaatggctgcctaaatatgatccccaatcagagacaacgataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1072183 lncRNA upstream 23167 8350382 ~ 8351339 (+) True G940087
TU1072060 lncRNA upstream 218890 8155402 ~ 8155616 (+) True G939970
TU1071747 lncRNA upstream 244133 8130061 ~ 8130373 (+) True G939686
TU1071716 lncRNA upstream 288169 8084736 ~ 8086337 (+) False G939660
TU1071719 lncRNA upstream 288462 8084736 ~ 8086044 (+) True G939660
TU1072202 lncRNA downstream 10092 8388020 ~ 8388242 (+) True G940105
TU1072205 lncRNA downstream 19644 8397572 ~ 8397803 (+) True G940108
TU1072207 lncRNA downstream 23441 8401369 ~ 8401606 (+) True G940110
TU1072345 lncRNA downstream 32190 8410118 ~ 8410328 (+) True G940233
TU1072346 lncRNA downstream 32504 8410432 ~ 8410666 (+) True G940234
XM_036936634.1 mRNA upstream 36866 8294346 ~ 8337640 (+) True LOC118937462
XM_021620079.2 mRNA upstream 148468 8195607 ~ 8226038 (+) False LOC110535212
XM_036936611.1 mRNA upstream 198721 8174793 ~ 8175785 (+) True LOC118937436
XR_005034786.1 mRNA upstream 200481 8171872 ~ 8174025 (+) True LOC110536601
XM_021620072.1 mRNA upstream 402695 7969927 ~ 7971811 (+) True LOC110535207
XM_036934763.1 mRNA downstream 3442 8381370 ~ 8497020 (+) False LOC110536544
XM_036934764.1 mRNA downstream 272510 8650438 ~ 8685656 (+) True LOC110535213
XR_002475217.2 mRNA downstream 421612 8799540 ~ 8802257 (+) False LOC110535219
XR_005034543.1 mRNA downstream 421612 8799540 ~ 8802257 (+) False LOC110535219
LOC118937463 mRNA downstream 467637 8845565 ~ 8855476 (+) False LOC118937463
TU1071752 other upstream 233923 8140266 ~ 8140583 (+) True G939690
TU1071586 other upstream 551189 7820520 ~ 7823317 (+) True G939544
TU1071428 other upstream 799597 7574352 ~ 7574909 (+) True G939408
TU1070683 other upstream 1353082 7019151 ~ 7021424 (+) False G938723
TU1072200 other downstream 1919 8379847 ~ 8381580 (+) False LOC110536544
TU1072364 other downstream 61552 8439480 ~ 8439775 (+) True G940247
TU1072470 other downstream 154612 8532540 ~ 8540867 (+) True G940313
TU1072537 other downstream 273576 8651504 ~ 8652521 (+) False G940376
TU1072646 other downstream 474566 8852494 ~ 8855437 (+) True LOC118937463

Expression Profile