RNA id: TU1072764


Basic Information

Item Value
RNA id TU1072764
length 295
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G940573
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 9260998 ~ 9261292 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttctctcaaccagcttcatgaggtagtcacctggaatccatttcaattaacaggtgtgccttgttaaaagttaatttgtggaatttctttccttcttaatgcgtttcagccaatcagttgtgttgtgacaaggtagggatggtatacagaagatggtctttcaccaaatagggctaagccCATCATTTTCTTTTCTTCCaattttaaattgaacctttatttaactaggcaagtcagttaagaacaaactattatttacaatgactgcctaccccggccaaagctgggccaattg

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1072696 lncRNA upstream 18914 9060216 ~ 9242084 (+) True G940515
TU1072717 lncRNA upstream 62556 9062691 ~ 9198442 (+) True G940529
TU1072700 lncRNA upstream 113540 9070549 ~ 9147458 (+) False G940516
TU1072701 lncRNA upstream 113540 9120707 ~ 9147458 (+) True G940516
TU1072706 lncRNA upstream 154153 9029554 ~ 9106845 (+) True G940520
TU1072765 lncRNA downstream 1457 9262749 ~ 9264652 (+) True G940574
TU1072774 lncRNA downstream 9351 9270643 ~ 9271014 (+) True G940579
TU1072781 lncRNA downstream 19637 9280929 ~ 9281140 (+) True G940586
TU1072768 lncRNA downstream 35815 9297107 ~ 9342400 (+) False G940576
TU1072767 lncRNA downstream 35883 9297175 ~ 9302514 (+) False G940576
XR_005034544.1 mRNA upstream 284594 8972920 ~ 8976404 (+) True LOC118937300
XM_036934770.1 mRNA upstream 292513 8938355 ~ 8968485 (+) False LOC110535229
XM_036934771.1 mRNA upstream 292513 8962422 ~ 8968485 (+) True LOC110535229
XM_021620102.2 mRNA upstream 314377 8938355 ~ 8946621 (+) False LOC110535229
XM_021620101.2 mRNA upstream 314410 8938355 ~ 8946588 (+) False LOC110535229
XM_036934807.1 mRNA downstream 17633 9278925 ~ 9296959 (+) False LOC110535237
XM_036934809.1 mRNA downstream 23124 9284416 ~ 9296959 (+) True LOC110535237
XR_005034814.1 mRNA downstream 29435 9290727 ~ 9290864 (+) True LOC118937475
NM_001165190.1 mRNA downstream 57740 9319032 ~ 9329583 (+) True LOC100305285
XM_036934811.1 mRNA downstream 95737 9357029 ~ 9405871 (+) False LOC110535239
TU1072646 other upstream 405561 8852494 ~ 8855437 (+) True LOC118937463
TU1072537 other upstream 608477 8651504 ~ 8652521 (+) False G940376
TU1072470 other upstream 720131 8532540 ~ 8540867 (+) True G940313
TU1072364 other upstream 821223 8439480 ~ 8439775 (+) True G940247
TU1072200 other upstream 879418 8379847 ~ 8381580 (+) False LOC110536544
TU1074217 other downstream 983817 10245109 ~ 10245506 (+) True G941893
TU1075144 other downstream 1849434 11110726 ~ 11111336 (+) True G942702
TU1077607 other downstream 4126258 13387550 ~ 13394875 (+) True G944957
TU1079178 other downstream 4803256 14064548 ~ 14065869 (+) True G946426
TU1079304 other downstream 4894062 14155354 ~ 14170877 (+) False LOC110535304

Expression Profile