RNA id: TU1072774


Basic Information

Item Value
RNA id TU1072774
length 372
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G940579
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 9270643 ~ 9271014 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTCAGATTATAGCTGGTTGAGATTTTAATATGGTTTATTCTAATGAGACTGATTGATTGCCTCATAGGCCTAACATTGGTGTGAACAAGTTCGTAAATTTCTGTCAAAACCCGGACTTAATTGACATATGGAGAGTTAAAAACCCTGGAGAGAGACGATACACATGAAGTAATAGAGATTGTTCTCTACAATCAAGAATTGATTTGTGGGTGATAACCTCTAGTCTTGAGCCCAACACTGTAGAGGTAAAAATATTGCCTGCAGTCCTGACGGATCATAAAGTCAAATGGTTGACTGTAAGAATGTGCAGCAATGATGGTAAGAAATACTCGGGTGGTTATTGGAAATTAAATAACTCATTGTTATTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1072765 lncRNA upstream 5991 9262749 ~ 9264652 (+) True G940574
TU1072764 lncRNA upstream 9351 9260998 ~ 9261292 (+) True G940573
TU1072696 lncRNA upstream 28559 9060216 ~ 9242084 (+) True G940515
TU1072781 lncRNA downstream 9915 9280929 ~ 9281140 (+) True G940586
TU1072768 lncRNA downstream 26093 9297107 ~ 9342400 (+) False G940576
TU1072767 lncRNA downstream 26161 9297175 ~ 9302514 (+) False G940576
TU1072769 lncRNA downstream 26161 9297175 ~ 9342601 (+) False G940576
TU1072770 lncRNA downstream 26161 9297175 ~ 9302611 (+) True G940576
XR_005034544.1 mRNA upstream 294239 8972920 ~ 8976404 (+) True LOC118937300
XM_036934770.1 mRNA upstream 302158 8938355 ~ 8968485 (+) False LOC110535229
XM_036934771.1 mRNA upstream 302158 8962422 ~ 8968485 (+) True LOC110535229
XM_021620102.2 mRNA upstream 324022 8938355 ~ 8946621 (+) False LOC110535229
XM_021620101.2 mRNA upstream 324055 8938355 ~ 8946588 (+) False LOC110535229
XM_036934807.1 mRNA downstream 7911 9278925 ~ 9296959 (+) False LOC110535237
XM_036934809.1 mRNA downstream 13402 9284416 ~ 9296959 (+) True LOC110535237
XR_005034814.1 mRNA downstream 19713 9290727 ~ 9290864 (+) True LOC118937475
NM_001165190.1 mRNA downstream 48018 9319032 ~ 9329583 (+) True LOC100305285
XM_036934811.1 mRNA downstream 86015 9357029 ~ 9405871 (+) False LOC110535239
TU1072646 other upstream 415206 8852494 ~ 8855437 (+) True LOC118937463
TU1072537 other upstream 618122 8651504 ~ 8652521 (+) False G940376
TU1072470 other upstream 729776 8532540 ~ 8540867 (+) True G940313
TU1072364 other upstream 830868 8439480 ~ 8439775 (+) True G940247
TU1072200 other upstream 889063 8379847 ~ 8381580 (+) False LOC110536544
TU1074217 other downstream 974095 10245109 ~ 10245506 (+) True G941893
TU1075144 other downstream 1839712 11110726 ~ 11111336 (+) True G942702
TU1077607 other downstream 4116536 13387550 ~ 13394875 (+) True G944957
TU1079178 other downstream 4793534 14064548 ~ 14065869 (+) True G946426
TU1079304 other downstream 4884340 14155354 ~ 14170877 (+) False LOC110535304

Expression Profile