RNA id: TU1072767


Basic Information

Item Value
RNA id TU1072767
length 3418
lncRNA type antisense_over
GC content 0.43
exon number 3
gene id G940576
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 9297107 ~ 9342601 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCAATTTTTGTTATATTTTATTTACATCGGATACAATTGGCATCATATGCTTGCTGATAGATAAACACTCAACACACTTATCTAATAGCTTCTGCTGGGTTCAGCGATCACATCTACTAACATGTCTTCCcattttttgtatttgttttattcaTTCTCTTTTATTCTGTCAACAGCTTTCAGCCCACAATCAGTAACTACTAGTTACATCACCTACTCAAATCCATcttatatgtgtatatacagtgccttgcaaaagtattcaccccctttggcgttattcctattttgttgcattacaacctgtaatttaagtAGATTTTTATTTAGATTTTGTGTAATGGACGTACACAGAATAGTCCAAAtgggtgaagtgaaatttaaaaaaaatgtaaactgaaaagtggtgcgtgcacatgtattcaccccctttgctatgaagcccctaaataagatctggtgtaaccaattaccttcagaagtcacataattagttagattgcacacaggtggagtttaagtgtcacatgatctcagtatatatacacctgttctgaaaggccccagagtctgcaacaccactaagcaagcagcactatgaagaccaaggagctctccaaacaggtcagggacaaagttgtggagaagtacagatcagggttgggttataaaagaatatccgaaactttgaacatcctacgaagaaccattaaatccattatttaaaaatttaaagaatatggcaccacaacaaacctgccaagagagggccgcccaccaaaactcacagaccaggcgaggagagcattaatcagagaggcaacaaacagACCAAAGATACCTCAGCTGTGGAGATTTGCAGCTCCTTAAAGGGTTATCTTTCCATAGGACCaatttaagccgtacactccacagagctgggctttatggaagagtggccagaaaaaaataagcaaacatgtttggtgtttgccaaaaggcatgtgggagactccccaaacatatggaagaaggtactctggtcagatgagactaaaattgaactttttggccatcaaggaaaacacttaagtctggtgcaaacccaacacctctcacccCGAGAACcctatccccacagtgaagcatggtggtggcagcatcatgctgtggggatgtgtttcatcagcagggactgggaaactggtcagaattgaaggaatgatggctggtgctaaatacagggaaattcttgagggaaaccagtttgtcttccagagatttgagactgggacggaggttcaccttccagtaggacaatgaccctaagcatactcctaagcaacactcaagtgtttttaaggggaaacattttaaatgtcttggaatggcctagtcaaagcccagacctctatccaattgagaatctgtggtatgacttaatgCTTaaagaacccatccaacttgaaggagctggagcagttttgccttgaagaatgggcaaaaatcccagtggcttgatgtgccaagcttatagagacataccccaagagacgtgcagctgtaattgctgcaaaaggtggctctacaaagtattaacttggggggggtcaataattatgcacgctcaagttctctttttttgtcttatttcttgtttgtttcacaataaaaaattatttgcattttcaaagtggtaggcatgttttttaaataatatgatacaaatcccccccccccccccccccccctcccccgaaaaaatatattttaattccaggttgtaaggcaacaaaataggaaaaatgccaaggggatgaatacttttgcaagacactgAATAACAAGCAATAGCTAGACAAACCAAGTCTATAGAGATGCCAAATATTACATAGCAAACAAAGTTCATGAaataatattacaacaaatacttggaaagaaatatatatataaggcAGGATTTAGATCAGGGATGTGCAACTGGCGGACCACATGCCCCCTTTTGAAGCTCTCGGCTCAATTTCCTCAGTTGGGATCTCCACTTACTTTTGTGAGTTTAAATAGTAGAATAAgcaaggtgcaattttgaaatgtaGTTGTGCATCTACAGTTTTCCCTCATATATCAGACACTAATAGTCAGTCAATTAGCCCATATCAGCTAAAATGTTTAAGATTGGTAACTTAATCTAgccggccagctatctaaacttgtagtacaCATGGTCGAATTACTATCTGGGGGGCCCACATTTTGAATTTTGTTAGTCTCACTCAGATctcattaaaaactgcaaacatttctctccaccctatgaaagaatctgtagaattgcagcaaacttgctttaagcAGCAACATTTTCAGGGGTTCAGAtttagtgtggtcagggcgtgagttgtgtgggcagtctatgttttctgtttctacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcatagATAGCTTTACAGGTCAACTTtgcttttgtctttttttttttttttttttgcttaaaTGTTTATACGATTCAAAGCCCTAGTGGCTGATCCATGTTTAATTGCACTGATCATTAAGTTATAGCTTCTTCTGGCGATGATCCTGAGAGTTCCCTCACACCTCACGAATCTCCTGTTTGGGCTGTGACTCGATGTCCAAGGCCACGGTCATCTCTACTGGCTGGAAGCCGTTCTCCTTGTCTGTGTGCGACTCTTCCAGGGCAGGATGTCCACTCCGGTCCGACAGAAGGAGCGGTCTGTGTGGGACTCGGTGCTGTAGAGTACCTCCTGGGTCTTCTTGTCTCCGGGGATCTGAGCCTTGACCCGTACCTCCAAGATGGTGATTTCCTTCTCCTTCAGTTTGCCTGACTTGCTCTTCACCTGCGTCCGCTTGGTGTCCACCCACACCACCCGCTCCTTCACTGCGGATCTTCGATGCCCAGATCTGCCAGGGTCGTGTCCAGGAACGGGAAAGGCTGGTCAGCACTGATGACCTCGATGGGCAAAGGGACACTCATGGGCACGTCCCATTCCAGCTCGGTGCGTACCATGTTCCCCAGGATAGGGGAATCTTTTGGGCTGTGTTGTTCTCCGTTGGTCTGTGTCTCCTGGGCCTCCGAGGTGTGATTTGTCTCTTCTGCCATGTCAGTGTCTTTGGCCAGCCTGACTGAAAAAAACACCACTATCTAAAATGGGACGGCTACTTTCCCGTCTTTCTGTTATTGTGGTTTGTTTCTGATTTGACTTCTCAGTATCTATCCAGTAGACAGTTGTCGTCTTCCGTTACTTCTACAGTTGCTTTGGTCAGAAGAATAGAAAGGCTTGTCTGTGATACTAAGTCCAAGTGAATGGTTCAGAACGAAAGCAGGtccttttccttcctctctgagCAGAGTGGTCGAGACTGAAGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1072781 lncRNA upstream 16035 9280929 ~ 9281140 (+) True G940586
TU1072774 lncRNA upstream 26161 9270643 ~ 9271014 (+) True G940579
TU1072765 lncRNA upstream 32523 9262749 ~ 9264652 (+) True G940574
TU1072764 lncRNA upstream 35883 9260998 ~ 9261292 (+) True G940573
TU1072701 lncRNA upstream 149717 9120707 ~ 9147458 (+) True G940516
TU1072830 lncRNA downstream 64537 9367051 ~ 9381784 (+) True G940632
TU1072816 lncRNA downstream 99917 9402431 ~ 9405490 (+) True LOC110535239
TU1072814 lncRNA downstream 103790 9406304 ~ 9407558 (+) True G940618
TU1072812 lncRNA downstream 105311 9407825 ~ 9409672 (+) True G940616
TU1072817 lncRNA downstream 110675 9413189 ~ 9421918 (+) True G940620
XM_036934807.1 mRNA upstream 216 9278925 ~ 9296959 (+) False LOC110535237
XM_036934809.1 mRNA upstream 216 9284416 ~ 9296959 (+) True LOC110535237
XR_005034814.1 mRNA upstream 6311 9290727 ~ 9290864 (+) True LOC118937475
XR_005034544.1 mRNA upstream 320771 8972920 ~ 8976404 (+) True LOC118937300
XM_036934770.1 mRNA upstream 328690 8938355 ~ 8968485 (+) False LOC110535229
NM_001165190.1 mRNA downstream 16518 9319032 ~ 9329583 (+) True LOC100305285
XM_036934811.1 mRNA downstream 54515 9357029 ~ 9405871 (+) False LOC110535239
XR_005034552.1 mRNA downstream 108364 9410878 ~ 9412277 (+) True LOC118937311
XM_021620129.2 mRNA downstream 869335 10171849 ~ 10175528 (+) False LOC110535246
XM_021620131.2 mRNA downstream 869501 10172015 ~ 10175528 (+) False LOC110535246
TU1072646 other upstream 441738 8852494 ~ 8855437 (+) True LOC118937463
TU1072537 other upstream 644654 8651504 ~ 8652521 (+) False G940376
TU1072470 other upstream 756308 8532540 ~ 8540867 (+) True G940313
TU1072364 other upstream 857400 8439480 ~ 8439775 (+) True G940247
TU1072200 other upstream 915595 8379847 ~ 8381580 (+) False LOC110536544
TU1074217 other downstream 942595 10245109 ~ 10245506 (+) True G941893
TU1075144 other downstream 1808212 11110726 ~ 11111336 (+) True G942702
TU1077607 other downstream 4085036 13387550 ~ 13394875 (+) True G944957
TU1079178 other downstream 4762034 14064548 ~ 14065869 (+) True G946426
TU1079304 other downstream 4852840 14155354 ~ 14170877 (+) False LOC110535304

Expression Profile