RNA id: TU1072830



Basic Information


Item Value
RNA id TU1072830
length 278
lncRNA type intronic
GC content 0.45
exon number 2
gene id G940632
representative True

Chromosome Information


Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 9367051 ~ 9381784 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


taCTAATTTGGTGTAACAAGTGGTTCAGGGTAGCCTAGGAGTTAGAGCATTGGATTAGTAACCGattagtaaccgaaaagttgcaagtttgaaaaccccgagctgacaaggtagaaatttgtcgttctgcccctgaacaaggcagttaacccactgttcctagaccagttaacccactgttcctagaccagttaacccactgttcctagatcagttaacccactgttcctagaccagttaacccactgttcctagaccagttaacccactgttcctag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1072769 lncRNA upstream 24450 9297175 ~ 9342601 (+) False G940576
TU1072768 lncRNA upstream 24651 9297107 ~ 9342400 (+) False G940576
TU1072770 lncRNA upstream 64440 9297175 ~ 9302611 (+) True G940576
TU1072767 lncRNA upstream 64537 9297175 ~ 9302514 (+) False G940576
TU1072781 lncRNA upstream 85911 9280929 ~ 9281140 (+) True G940586
TU1072816 lncRNA downstream 20647 9402431 ~ 9405490 (+) True LOC110535239
TU1072814 lncRNA downstream 24520 9406304 ~ 9407558 (+) True G940618
TU1072812 lncRNA downstream 26041 9407825 ~ 9409672 (+) True G940616
TU1072817 lncRNA downstream 31405 9413189 ~ 9421918 (+) True G940620
TU1072859 lncRNA downstream 36472 9418256 ~ 9419257 (+) True G940658
NM_001165190.1 mRNA upstream 37468 9319032 ~ 9329583 (+) True LOC100305285
XM_036934807.1 mRNA upstream 70092 9278925 ~ 9296959 (+) False LOC110535237
XM_036934809.1 mRNA upstream 70092 9284416 ~ 9296959 (+) True LOC110535237
XR_005034814.1 mRNA upstream 76187 9290727 ~ 9290864 (+) True LOC118937475
XR_005034544.1 mRNA upstream 390647 8972920 ~ 8976404 (+) True LOC118937300
XR_005034552.1 mRNA downstream 29094 9410878 ~ 9412277 (+) True LOC118937311
XM_021620129.2 mRNA downstream 790065 10171849 ~ 10175528 (+) False LOC110535246
XM_021620131.2 mRNA downstream 790231 10172015 ~ 10175528 (+) False LOC110535246
XM_021620130.2 mRNA downstream 791004 10172788 ~ 10175528 (+) True LOC110535246
XR_005034554.1 mRNA downstream 885480 10267264 ~ 10269419 (+) True LOC118937312
TU1072646 other upstream 511614 8852494 ~ 8855437 (+) True LOC118937463
TU1072537 other upstream 714530 8651504 ~ 8652521 (+) False G940376
TU1072470 other upstream 826184 8532540 ~ 8540867 (+) True G940313
TU1072364 other upstream 927276 8439480 ~ 8439775 (+) True G940247
TU1072200 other upstream 985471 8379847 ~ 8381580 (+) False LOC110536544
TU1074217 other downstream 863325 10245109 ~ 10245506 (+) True G941893
TU1075144 other downstream 1728942 11110726 ~ 11111336 (+) True G942702
TU1077607 other downstream 4005766 13387550 ~ 13394875 (+) True G944957
TU1079178 other downstream 4682764 14064548 ~ 14065869 (+) True G946426
TU1079304 other downstream 4773570 14155354 ~ 14170877 (+) False LOC110535304

Expression Profile