RNA id: TU1072812


Basic Information

Item Value
RNA id TU1072812
length 1827
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G940616
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 9407825 ~ 9409672 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccGCTTTCCTTCACTGGAGTCTGCCTAGACCATGTGCTATCCATAAAGATTGTACTAACAATATGTGGTTAACCTCTGAATGCATTTGTTTCCCTTAATTGAGCATTGAATGTAAAACCTGCCTCATACAACAACTCCATGAACATACAATCttttgattcccccccccccccccccaaaagccCCAGAatagcgcacacacacatattcaaagACTTAGTCTACATCTGGAAAGAAGGAAAATCAACATTGTCATCATATCTTACTGACTAAACAAGTAAAATATAATTGATCATTATGTGGGtggaaaatctattttttttgttattctgtttTTGCTCTTCCAAGCATACGAGGTAAACCAAACattccagatttttttttttacaaaggtcGATACACCCAAAGTAAAAGTGACCATAGCACTGATGTTGTGGCGTTCTTGTGCTTCACTGGGAAAAATGTTTCACACTGGGGCCTGATAGACGCTTAGTCAATAGAACAGAATATTAAAATGAGCTTTGTGAAATATATTGCATTTACACAAAGACATGTTCCATTCTAATGAACTAGCTGTAGAAAAcccatttttaaaatatatatgtatatatttttttgtacatttgacACAATCCCTTGCAAACCATTTGAGGGACTTTGTGTCAAACATGGAGTTAATGACAAATAGAGCTGTCCTGTAATGACCCAAACTGGCCGAGTCCATTCCATCCATTCAAAAAGGCCTGACTTGAGTGTACGAACTGACGATCACAATCATTGTTCATAAAAACGTTGGTAACACCAACACGGCACCTGATATTGGGCCGCAGTCGGGACCGAACTGAAGCCTCACAGCAcaaacatatacatacatatataaaaaatatatataggtcTACATTCAGACTTTTTGTAGCACATTTATGATGGCAGTTTGACACGAAACACTGAAAAGTAGCTTCCCGCAGCCTTCCCCGACATAGCCAACaagcagttggggggggggggactctacAAAAACACAAGTGGGATACAAATATAGTTGATAAAGAGATAGTATGGAGTAGGTCGAGAACTGGGTGTCCCTGAGAGTTAAGTTAGTTAGGCCGTTGCTGGCATGGGATGAGAAGTACCGTCAACTTAACGCTCAACGTCACACGGCTCTGACCTCTTTGCTGCAGTACCATTACATTAGTGGCTCGTGATTTATCAGCATGATttccttaaaaaaatatattaaaaaaaataaccaaaaataatgtttttgaaATTTCAGACAAACTCAGTCAGGTTAATCCAACATTTTTTTGATACAACCGGCAGGCACCAATATACGACGACCGTCCTTTGAGTTGTGTCAAGCGTTGTGGATGACTAACGGTTTGTCAAGGTCTGACTGATTATGTACCGCTGGCAAAAAGTGGTTGTCGATCACATCATTTCATTTCCAGAAGAACAGAGGAACTAGGCAGCCCAAACGAATACAGTCACACAAACTATTGGATTAGAACAGAAACAAAGGGGGGTAAACAAGGCATTACAGAGTGTTTTTATTTAGTTAATTTTTTAAGTGTCTTGATTCTACTGCTTTCTGAAAGGAAAacaatcagagagagaagagagctagCCTCTATGGGAGAGAGGATTCCTCTCATTGGCCAGATACGCTGTGTGAGGGAGGAAAGAAGTATCGACGGATGTTGATTGGATAGTGCTACAGCTCGTCTCGGGCCTGCTTCATCACAAAGCCGTGCAGGCTCTCCAAGTCGCGCCCTCCATGATGCTCCTCACCTTGCACACCCGCTCTGAACATCAGCAGGGTGGGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1072814 lncRNA upstream 267 9406304 ~ 9407558 (+) True G940618
TU1072816 lncRNA upstream 2335 9402431 ~ 9405490 (+) True LOC110535239
TU1072830 lncRNA upstream 26041 9367051 ~ 9381784 (+) True G940632
TU1072769 lncRNA upstream 65224 9297175 ~ 9342601 (+) False G940576
TU1072770 lncRNA upstream 105214 9297175 ~ 9302611 (+) True G940576
TU1072817 lncRNA downstream 3517 9413189 ~ 9421918 (+) True G940620
TU1072859 lncRNA downstream 8584 9418256 ~ 9419257 (+) True G940658
TU1072861 lncRNA downstream 15075 9424747 ~ 9425079 (+) True G940660
TU1072871 lncRNA downstream 24042 9433714 ~ 9434020 (+) True G940670
TU1072879 lncRNA downstream 38484 9448156 ~ 9448409 (+) True G940678
XM_036934811.1 mRNA upstream 1954 9357029 ~ 9405871 (+) False LOC110535239
NM_001165190.1 mRNA upstream 78242 9319032 ~ 9329583 (+) True LOC100305285
XM_036934807.1 mRNA upstream 110866 9278925 ~ 9296959 (+) False LOC110535237
XR_005034552.1 mRNA downstream 1206 9410878 ~ 9412277 (+) True LOC118937311
XM_021620129.2 mRNA downstream 762177 10171849 ~ 10175528 (+) False LOC110535246
XM_021620131.2 mRNA downstream 762343 10172015 ~ 10175528 (+) False LOC110535246
XM_021620130.2 mRNA downstream 763116 10172788 ~ 10175528 (+) True LOC110535246
XR_005034554.1 mRNA downstream 857592 10267264 ~ 10269419 (+) True LOC118937312
TU1072646 other upstream 552388 8852494 ~ 8855437 (+) True LOC118937463
TU1072537 other upstream 755304 8651504 ~ 8652521 (+) False G940376
TU1072470 other upstream 866958 8532540 ~ 8540867 (+) True G940313
TU1072364 other upstream 968050 8439480 ~ 8439775 (+) True G940247
TU1072200 other upstream 1026245 8379847 ~ 8381580 (+) False LOC110536544
TU1074217 other downstream 835437 10245109 ~ 10245506 (+) True G941893
TU1075144 other downstream 1701054 11110726 ~ 11111336 (+) True G942702
TU1077607 other downstream 3977878 13387550 ~ 13394875 (+) True G944957
TU1079178 other downstream 4654876 14064548 ~ 14065869 (+) True G946426
TU1079304 other downstream 4745682 14155354 ~ 14170877 (+) False LOC110535304

Expression Profile