RNA id: TCONS_00039706


Basic Information

Item Value
RNA id TCONS_00039706
length 355
lncRNA type inter_gene
GC content 0.55
exon number 2
gene id XLOC_019872
representative True

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 44157073 ~ 44157770 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

catATTCACAGGCTTTCTGTGGTAAGCTGGCCTTGTCAGCAAAACTGCCAGACTGTGACTTCACCCGTatgcgtgcctgtgtgtgtgtgtgtgtgtgtgtgcggctgtGCTGCTGAAGGTGTGATCCTGAGTGCACACATTTGAGCGTGTGGCGTCTCTGACACCGGGCCGGTTCTAATGAGGCGGTTCAGCAGGATCCGCACCCGAGCCGTGCCACCGAACATTGACAAATGGCTCTGCTCTCCTCATTTCATCTAAGTGAGCGAGGCCACAAGAGCTACCGGCAATTTCATAGAAACGAGTCCCCTGAGTCTGAACGTGACTTCGCTTTTGCCTGGTGATACCTGTGCTCCCG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039705 lncRNA downstream 456793 43684862 ~ 43700280 (-) False XLOC_019864
TCONS_00039704 lncRNA downstream 456793 43684862 ~ 43700280 (-) True XLOC_019864
TCONS_00039703 lncRNA downstream 456811 43684862 ~ 43700262 (-) False XLOC_019864
TCONS_00039702 lncRNA downstream 456819 43684862 ~ 43700254 (-) False XLOC_019864
TCONS_00039065 lncRNA downstream 683073 43469329 ~ 43474000 (-) True XLOC_019855
TCONS_00039102 lncRNA upstream 584528 44742298 ~ 44747236 (-) True XLOC_019878
TCONS_00039707 lncRNA upstream 624498 44782268 ~ 44785206 (-) True XLOC_019879
TCONS_00039708 lncRNA upstream 963592 45121362 ~ 45123821 (-) True XLOC_019881
TCONS_00039709 lncRNA upstream 1007044 45164814 ~ 45182824 (-) False XLOC_019882
TCONS_00039113 lncRNA upstream 1040537 45198307 ~ 45210032 (-) True XLOC_019883
TCONS_00039092 mRNA downstream 52473 44091342 ~ 44104600 (-) True XLOC_019871
TCONS_00039091 mRNA downstream 75533 44041088 ~ 44081540 (-) True XLOC_019870
TCONS_00039090 mRNA downstream 147904 44005521 ~ 44009169 (-) True XLOC_019869
TCONS_00039089 mRNA downstream 153616 43999699 ~ 44003457 (-) True XLOC_019868
TCONS_00039088 mRNA downstream 165046 43976075 ~ 43992027 (-) True XLOC_019867
TCONS_00039093 mRNA upstream 347843 44505613 ~ 44512893 (-) True XLOC_019873
TCONS_00039094 mRNA upstream 389680 44547450 ~ 44556148 (-) False XLOC_019874
TCONS_00039095 mRNA upstream 389861 44547631 ~ 44556411 (-) True XLOC_019874
TCONS_00039096 mRNA upstream 400021 44557791 ~ 44565862 (-) False XLOC_019875
TCONS_00039097 mRNA upstream 400679 44558449 ~ 44565236 (-) True XLOC_019875
TCONS_00039085 other downstream 355562 43754977 ~ 43801511 (-) True XLOC_019865
TCONS_00039061 other downstream 763994 43390401 ~ 43393079 (-) True XLOC_019853
TCONS_00039031 other downstream 2283976 41863654 ~ 41873097 (-) True XLOC_019836
TCONS_00039016 other downstream 2805408 41351545 ~ 41351665 (-) True XLOC_019828
TCONS_00039012 other downstream 2905525 41251431 ~ 41251548 (-) True XLOC_019825
TCONS_00039098 other upstream 410410 44568180 ~ 44568266 (-) True XLOC_019876
TCONS_00039112 other upstream 1039572 45197342 ~ 45209405 (-) False XLOC_019883