RNA id: TU1073666


Basic Information

Item Value
RNA id TU1073666
length 200
lncRNA type intronic
GC content 0.48
exon number 1
gene id G941382
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 9861211 ~ 9861410 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcctagcccagccaattgtgcgctgccctatgggactccaaatcacagccagatttgatacagcctggattcaaacaagGGACACCTTTTGCACTGAtgtgtagtgccttagaccactatgCCACTAGGGAGCCATAATGTATGCCCGCATGGATGTCTGTATATCTTGCCTCCTCTATTGATAATGCCAAAGATTAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1073665 lncRNA upstream 259 9860738 ~ 9860952 (+) True G941381
TU1073575 lncRNA upstream 196902 9662747 ~ 9664309 (+) True G941295
TU1073560 lncRNA upstream 223722 9637211 ~ 9637489 (+) True G941285
TU1073553 lncRNA upstream 228904 9632048 ~ 9632307 (+) True G941278
TU1073519 lncRNA upstream 252786 9607731 ~ 9608425 (+) False G941246
TU1073828 lncRNA downstream 29210 9890620 ~ 9891848 (+) True G941527
TU1073829 lncRNA downstream 30510 9891920 ~ 9892147 (+) True G941528
TU1073836 lncRNA downstream 36705 9898115 ~ 9898331 (+) True G941535
TU1073903 lncRNA downstream 85217 9946627 ~ 9946843 (+) True G941598
TU1073911 lncRNA downstream 96846 9958256 ~ 9958491 (+) True G941605
XR_005034552.1 mRNA upstream 448934 9410878 ~ 9412277 (+) True LOC118937311
XM_036934811.1 mRNA upstream 455340 9357029 ~ 9405871 (+) False LOC110535239
NM_001165190.1 mRNA upstream 531628 9319032 ~ 9329583 (+) True LOC100305285
XM_036934809.1 mRNA upstream 564252 9284416 ~ 9296959 (+) True LOC110535237
XM_021620129.2 mRNA downstream 310439 10171849 ~ 10175528 (+) False LOC110535246
XM_021620131.2 mRNA downstream 310605 10172015 ~ 10175528 (+) False LOC110535246
XM_021620130.2 mRNA downstream 311378 10172788 ~ 10175528 (+) True LOC110535246
XR_005034554.1 mRNA downstream 405854 10267264 ~ 10269419 (+) True LOC118937312
XM_036934813.1 mRNA downstream 444475 10305885 ~ 10367679 (+) False LOC110535248
TU1072646 other upstream 1005774 8852494 ~ 8855437 (+) True LOC118937463
TU1072537 other upstream 1208690 8651504 ~ 8652521 (+) False G940376
TU1072470 other upstream 1320344 8532540 ~ 8540867 (+) True G940313
TU1072364 other upstream 1421436 8439480 ~ 8439775 (+) True G940247
TU1072200 other upstream 1479631 8379847 ~ 8381580 (+) False LOC110536544
TU1074217 other downstream 383699 10245109 ~ 10245506 (+) True G941893
TU1075144 other downstream 1249316 11110726 ~ 11111336 (+) True G942702
TU1077607 other downstream 3526140 13387550 ~ 13394875 (+) True G944957
TU1079178 other downstream 4203138 14064548 ~ 14065869 (+) True G946426
TU1079304 other downstream 4293944 14155354 ~ 14170877 (+) False LOC110535304

Expression Profile