RNA id: TU1073911


Basic Information

Item Value
RNA id TU1073911
length 236
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G941605
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 9958256 ~ 9958491 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTTTACAGTGACATGTTGTGCCTTCACATAGAACCACAGTCGTTTAAGTATTTCTCCACCCTGAACTCCATTCCTTTTTGCTACCCAATATCAACAATCCAGATTCAATAAgccaggtttactaagctatataaaggtcaggtttactaagctatataaaggtcaggtttactaagctttataaaggtcaggtttactaagctttataaaggtcaggtttactaagctttataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1073903 lncRNA upstream 11413 9946627 ~ 9946843 (+) True G941598
TU1073836 lncRNA upstream 59925 9898115 ~ 9898331 (+) True G941535
TU1073829 lncRNA upstream 66109 9891920 ~ 9892147 (+) True G941528
TU1073828 lncRNA upstream 66408 9890620 ~ 9891848 (+) True G941527
TU1073666 lncRNA upstream 96846 9861211 ~ 9861410 (+) True G941382
TU1073912 lncRNA downstream 885 9959376 ~ 9959659 (+) True G941606
TU1073913 lncRNA downstream 1189 9959680 ~ 9960531 (+) True G941607
TU1073914 lncRNA downstream 2506 9960997 ~ 9961874 (+) True G941608
TU1073915 lncRNA downstream 3456 9961947 ~ 9965255 (+) True G941609
TU1073917 lncRNA downstream 9702 9968193 ~ 9969237 (+) True G941611
XR_005034552.1 mRNA upstream 545979 9410878 ~ 9412277 (+) True LOC118937311
XM_036934811.1 mRNA upstream 552385 9357029 ~ 9405871 (+) False LOC110535239
NM_001165190.1 mRNA upstream 628673 9319032 ~ 9329583 (+) True LOC100305285
XM_036934809.1 mRNA upstream 661297 9284416 ~ 9296959 (+) True LOC110535237
XM_021620129.2 mRNA downstream 213358 10171849 ~ 10175528 (+) False LOC110535246
XM_021620131.2 mRNA downstream 213524 10172015 ~ 10175528 (+) False LOC110535246
XM_021620130.2 mRNA downstream 214297 10172788 ~ 10175528 (+) True LOC110535246
XR_005034554.1 mRNA downstream 308773 10267264 ~ 10269419 (+) True LOC118937312
XM_036934813.1 mRNA downstream 347394 10305885 ~ 10367679 (+) False LOC110535248
TU1072646 other upstream 1102819 8852494 ~ 8855437 (+) True LOC118937463
TU1072537 other upstream 1305735 8651504 ~ 8652521 (+) False G940376
TU1072470 other upstream 1417389 8532540 ~ 8540867 (+) True G940313
TU1072364 other upstream 1518481 8439480 ~ 8439775 (+) True G940247
TU1072200 other upstream 1576676 8379847 ~ 8381580 (+) False LOC110536544
TU1074217 other downstream 286618 10245109 ~ 10245506 (+) True G941893
TU1075144 other downstream 1152235 11110726 ~ 11111336 (+) True G942702
TU1077607 other downstream 3429059 13387550 ~ 13394875 (+) True G944957
TU1079178 other downstream 4106057 14064548 ~ 14065869 (+) True G946426
TU1079304 other downstream 4196863 14155354 ~ 14170877 (+) False LOC110535304

Expression Profile