RNA id: TU1073979


Basic Information

Item Value
RNA id TU1073979
length 351
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G941672
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 10023315 ~ 10023665 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcgtgattagtgttcatcatgtttaataaagacaataaacgtgaacactacaaaatacaaaacaacaaatgtgaaaaaaccgaaacagttctgtctggtgcagacacacaaagacagaagacaaccacccacaaaacccaacacaaaacaggctacctaaatatggttcccaatcagagacaatgactaacacctgcctctgattgagaaccatagcaggccaaacatagaaacgggaaaactagacacacaacatagaatgcccactcagctcacatcctgaccaacactaaaacaaaggaaacacacaagaactatggtcagaacgtgctACCATGGAAGGGAAAATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1073955 lncRNA upstream 18368 10004719 ~ 10004947 (+) True G941648
TU1073945 lncRNA upstream 26771 9996328 ~ 9996544 (+) True G941638
TU1073920 lncRNA upstream 50737 9971239 ~ 9972578 (+) True G941614
TU1073919 lncRNA upstream 52671 9970422 ~ 9970644 (+) True G941613
TU1073917 lncRNA upstream 54078 9968193 ~ 9969237 (+) True G941611
TU1073981 lncRNA downstream 171 10023836 ~ 10024063 (+) True G941674
TU1073989 lncRNA downstream 12978 10036643 ~ 10036876 (+) True G941682
TU1074004 lncRNA downstream 32784 10056449 ~ 10056650 (+) True G941697
TU1074017 lncRNA downstream 50975 10074640 ~ 10075160 (+) True G941710
TU1074078 lncRNA downstream 110672 10134337 ~ 10134540 (+) True G941768
XR_005034552.1 mRNA upstream 611038 9410878 ~ 9412277 (+) True LOC118937311
XM_036934811.1 mRNA upstream 617444 9357029 ~ 9405871 (+) False LOC110535239
NM_001165190.1 mRNA upstream 693732 9319032 ~ 9329583 (+) True LOC100305285
XM_036934809.1 mRNA upstream 726356 9284416 ~ 9296959 (+) True LOC110535237
XM_021620129.2 mRNA downstream 148184 10171849 ~ 10175528 (+) False LOC110535246
XM_021620131.2 mRNA downstream 148350 10172015 ~ 10175528 (+) False LOC110535246
XM_021620130.2 mRNA downstream 149123 10172788 ~ 10175528 (+) True LOC110535246
XR_005034554.1 mRNA downstream 243599 10267264 ~ 10269419 (+) True LOC118937312
XM_036934813.1 mRNA downstream 282220 10305885 ~ 10367679 (+) False LOC110535248
TU1072646 other upstream 1167878 8852494 ~ 8855437 (+) True LOC118937463
TU1072537 other upstream 1370794 8651504 ~ 8652521 (+) False G940376
TU1072470 other upstream 1482448 8532540 ~ 8540867 (+) True G940313
TU1072364 other upstream 1583540 8439480 ~ 8439775 (+) True G940247
TU1072200 other upstream 1641735 8379847 ~ 8381580 (+) False LOC110536544
TU1074217 other downstream 221444 10245109 ~ 10245506 (+) True G941893
TU1075144 other downstream 1087061 11110726 ~ 11111336 (+) True G942702
TU1077607 other downstream 3363885 13387550 ~ 13394875 (+) True G944957
TU1079178 other downstream 4040883 14064548 ~ 14065869 (+) True G946426
TU1079304 other downstream 4131689 14155354 ~ 14170877 (+) False LOC110535304

Expression Profile