RNA id: TU1074313


Basic Information

Item Value
RNA id TU1074313
length 1788
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G941976
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 10639997 ~ 10641784 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctgtacgggcccgtcaagttcttccacaacgatcttgacaaaccatttctgtatggacctttctttgtgcacgggggcattgtcatgctgaaacagaaaagggcctttcccaaactgttgccacaaagttggaagcaaagaatcgtctagaatggtgtagcgttaagatttcccttcactggaactaagcggcctgaaccatgaaaaacagccccagaccattattcctcctccactaaactttacagttggcactgtgcattggggcaggtagcgttctcctggaatccgtcaaacccagattaCTCCATCGgacagccagatggtgaagcgtgattcatcactccagagaattccactgctccagagtccaatggctgagagctttacaccactccagtcgatgcttggcattgagcatggtttTCTTAGGCccgtgtgcggctgctcggccatggaaacccatttcatgaagctcccgacgaacagttcttgtgctggcgttgcttccagaggcagtagAACTCCGTAGTGAGTTttgtaaccgaggacagacgatttctacgcacttcagcactcggcggtcccgttctgtgagcttgtgtggcctaccacttcacaactgagccgttgttgctcctatatgtttccacttcataataacagcacttacagttgactgggggcagctttagcagggcagaaatttgacaaactgacttgttgaaaaggtggcatcctatgacggtgccacgttgaaagtcactgagctcttcagtaagggccattctactgccaatgtttgtctatagagattgcccggctgtgtgctcgattttatacacacgtcagcaacgggtgtggatgaaatagctggatccactcatttgaaggggcgtCCACATACTTCTGACCATTTAGTGTATGTTATTTAAAACGACTGCCATATTCAATCAAAACTGATGGCCAGCCTTTCACAGACAACAGGTTTGATTTTACAGGCGCATTTAAGATGCTTTGTTTCATACCGTCAACATTTTTCATTCTATCATTCTAGCACAATAATGTTGTTTGACTGCATACCACACTGTTACTATACGCACTCCGGAATGGAACAGTTGATTGGTCTAAAGGTAGTCTGGTGGGATCTGTTTCAGGCCAGAGTGTGTTCCACTCCGAGGTGTGTACTGTAAGTTGTGTCACAGAGGAATCCGGTTGTTATTGCACGAGCCTCTGTGTTTATCCCTTGTTCTTCATGTCTTTAGCTATGCTTATTAAAGGTCTGCAACATTTGGTTTCAATTAGGGCCACAGAGGCTGGCAGAGAGCAGCAGACACGTTACTGCAACATCTTGGCGCAGCTTTATTGGCCTTGTAGAGGTTGTATGTGCTACATTCAATCGGTTTGTGTCCTTGCTTTCTTGTGCTGGTTCACTGTCGCGCACTGCTTATTTCCTTGATCTGTCGAGTTATTCATAGGGTTGTCGTGTAGCCAGTGGGTCTCGTGAAACAGAAAATGTTGGCTATTTGGCACAGAAGTGGAGCAATGTGGTTTATGGAAGCAGTGAGGTACTAAAGACAAACGCTTTAATTTCTAAGCCAATGCAACTATTTACATATAACCGCTAATGAACATGAGGTGAGGAAAGTAAAGTAGATACATTGTTCATGTAAAAGCAATAATATTATTTGAATTGTGACAGAAACGTGTAAAACACTTCATTCCAAACGGCAAACAGtaaaaataatgttttgtgtaaaaatgtaataaattaaaCATTTCTCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1074441 lncRNA upstream 18350 10621448 ~ 10621647 (+) True G942096
TU1074438 lncRNA upstream 34890 10604902 ~ 10605107 (+) True G942093
TU1074437 lncRNA upstream 37198 10602556 ~ 10602799 (+) True G942092
TU1074432 lncRNA upstream 51990 10587777 ~ 10588007 (+) True G942087
TU1074430 lncRNA upstream 56647 10583064 ~ 10583350 (+) True G942086
TU1074451 lncRNA downstream 4684 10646468 ~ 10647288 (+) True G942106
TU1074471 lncRNA downstream 44259 10686043 ~ 10686884 (+) True G942123
TU1074472 lncRNA downstream 45580 10687364 ~ 10687579 (+) True G942124
TU1074489 lncRNA downstream 55914 10697698 ~ 10704427 (+) True G942134
TU1074493 lncRNA downstream 64801 10706585 ~ 10706898 (+) True G942138
XM_021620141.2 mRNA upstream 575 10631364 ~ 10639422 (+) True LOC110535252
XM_036934818.1 mRNA upstream 15977 10395438 ~ 10624020 (+) False LOC110536547
XM_036934819.1 mRNA upstream 15977 10395438 ~ 10624020 (+) False LOC110536547
XM_036934820.1 mRNA upstream 15977 10395439 ~ 10624020 (+) True LOC110536547
XM_036934813.1 mRNA upstream 272318 10305885 ~ 10367679 (+) False LOC110535248
NM_001160650.2 mRNA downstream 24423 10666207 ~ 10671585 (+) False vapa
XM_021619875.2 mRNA downstream 24767 10666551 ~ 10671992 (+) True vapa
XM_021620151.2 mRNA downstream 383853 11025637 ~ 11064599 (+) False LOC110535262
XM_021620152.2 mRNA downstream 397845 11039629 ~ 11064599 (+) True LOC110535262
XM_021620153.2 mRNA downstream 513896 11155680 ~ 11158395 (+) True LOC110535263
TU1074217 other upstream 394491 10245109 ~ 10245506 (+) True G941893
TU1072646 other upstream 1784560 8852494 ~ 8855437 (+) True LOC118937463
TU1072537 other upstream 1987476 8651504 ~ 8652521 (+) False G940376
TU1072470 other upstream 2099130 8532540 ~ 8540867 (+) True G940313
TU1072364 other upstream 2200222 8439480 ~ 8439775 (+) True G940247
TU1075144 other downstream 468942 11110726 ~ 11111336 (+) True G942702
TU1077607 other downstream 2745766 13387550 ~ 13394875 (+) True G944957
TU1079178 other downstream 3422764 14064548 ~ 14065869 (+) True G946426
TU1079304 other downstream 3513570 14155354 ~ 14170877 (+) False LOC110535304
TU1079302 other downstream 3529758 14171542 ~ 14202999 (+) True LOC110535304

Expression Profile