RNA id: TU1074489


Basic Information

Item Value
RNA id TU1074489
length 1523
lncRNA type read_through
GC content 0.51
exon number 2
gene id G942134
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 10697698 ~ 10704427 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATCTTGACATTAGTTCGGTAAAATCGTAATGAGTAAACCGCAGAACAACTTCTATTACATTTCACCGACTGATATATAAAGTTTGCAAAAAAAATGCTGTATTTGTTCATTCCAGATTACCAGGAATGAATGAGATTCACAAGCGCCAAGGACTTTCATAACGCTGTCAAAACAACATACACGTGTGTTGAACTATTAATACTTCCAGTTGTTGCTCGGCCTCGGCGGCCATGGCTGCTGCCTGCAGCTGTTCAGTTTCGGTCTGCAGGGCGCTGGGCGGCATCTGCTTCCTCTCGCTGTGCATGTTGTTTTCATGTCTCTTTAGGTCTGAGGCTTTAGCAAAGGCCTTGGTGCACGAGCTGCAGACGAAAGGCTTCTCGCCCCTGTGGCGCCTCTCGTGGTCCTTCAGGTGGGACTTGTGCTTGAAGGCCTTGTCGCACATCTGGCAGCCGAAGGGACGCTCGTTGCTGTGGACCCGCTCGTGCTTCTTGAGGTCAGGCGCTCGGATGAAGGACTTGCCACACACGTCGCAGCGGTAGGGCTTGAAGCCTGTGTGGATCTTCAGATGCTCCTTCAGGTGAGCCTGGGTAGTGAAGGCTTTGCTGCAGATTTCACAGATGAACGGACGTTCGGCCGAGTGCAGCTTTTCGTGTTTCCTCAAACGGTTCTCGTCGATGAAGGTCTTTCCACAGATCTGGCAGGCGAGCTGTTCCCGTTGGCCGTAGAGGAGGTACTCGAACTTCATGTCCGTCGTGGCTGTGGTCCAACCGGGGGGCTGCTCGTCCTTCACCTCGCCGATGCTGTCAGCGAACGCTAAGGTCGTTGTGGTGTGACCCGCCAGGTCTTTTTGCTCCGTATCCATGGGTTCCACGTCCTGGTCGTAACAGCTCACCTTGTGCACGTCCTCATTGGCAGGAGGCCATTCTTTGAGAATGGCCTCCGTCACTCTCAACGCCGTGTTGGGCGATTTGTCCAAGTCGTGATTGGTCATTGGCTCTTCCACAAGGTCGTCAGTAGGAGTGTCGTCATGGTCACCTAGCACCTGCAAGTCGTTATCCTGGCCCAATGTAGGGTCATCAGTAGGGAGAGCCATTTTGAGAATATCACATGGAAAGGGTTTGTCATTTTGGCCGTTCCTTTCTTCAGTGGACATGTCACGCTTCTGTGAACAGAGTTTGTCCAGAAAACGGATTCCGAGTATTTGGCCTGAAGAAATCATCAAATTCACATCCTTTATCTTCACAGAAATCTTGGCCGTGTACATGTAGTTCAACACCTCCTCGAAGATGTCTGAGCGGATGAAGTCGATTTCTATGACTGAGGAGTTGTCGACTTCATGCTTCTTGAACAGCTTTTTGAAGTAGTTGCTACACGCTGCCAGCACACAGCGGTGCGCCCTGAACTTCACATCTTCAACCACCACCGCGATGTCACAGTGTTCACCCTCCAACCGTTGCTCATTCAGTATCTTCAGGAAGATGGTCTTGTGTTCATCATCCATGTACTTCACGGTCTCTGACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1074472 lncRNA upstream 10119 10687364 ~ 10687579 (+) True G942124
TU1074471 lncRNA upstream 10814 10686043 ~ 10686884 (+) True G942123
TU1074451 lncRNA upstream 50410 10646468 ~ 10647288 (+) True G942106
TU1074313 lncRNA upstream 55914 10639997 ~ 10641784 (+) True G941976
TU1074441 lncRNA upstream 76051 10621448 ~ 10621647 (+) True G942096
TU1074493 lncRNA downstream 2158 10706585 ~ 10706898 (+) True G942138
TU1074500 lncRNA downstream 5406 10709833 ~ 10711750 (+) False G942140
TU1074501 lncRNA downstream 5406 10709833 ~ 10711750 (+) False G942140
TU1074502 lncRNA downstream 5406 10709833 ~ 10713752 (+) False G942140
TU1074503 lncRNA downstream 5406 10709833 ~ 10711750 (+) False G942140
XM_021619875.2 mRNA upstream 25706 10666551 ~ 10671992 (+) True vapa
NM_001160650.2 mRNA upstream 26113 10666207 ~ 10671585 (+) False vapa
XM_021620141.2 mRNA upstream 58276 10631364 ~ 10639422 (+) True LOC110535252
XM_036934819.1 mRNA upstream 73678 10395438 ~ 10624020 (+) False LOC110536547
XM_021620151.2 mRNA downstream 321210 11025637 ~ 11064599 (+) False LOC110535262
XM_021620152.2 mRNA downstream 335202 11039629 ~ 11064599 (+) True LOC110535262
XM_021620153.2 mRNA downstream 451253 11155680 ~ 11158395 (+) True LOC110535263
XM_036934852.1 mRNA downstream 473905 11178332 ~ 11497838 (+) False LOC110535264
XM_036934853.1 mRNA downstream 473905 11178332 ~ 11497838 (+) False LOC110535264
TU1074217 other upstream 452192 10245109 ~ 10245506 (+) True G941893
TU1072646 other upstream 1842261 8852494 ~ 8855437 (+) True LOC118937463
TU1072537 other upstream 2045177 8651504 ~ 8652521 (+) False G940376
TU1072470 other upstream 2156831 8532540 ~ 8540867 (+) True G940313
TU1072364 other upstream 2257923 8439480 ~ 8439775 (+) True G940247
TU1075144 other downstream 406299 11110726 ~ 11111336 (+) True G942702
TU1077607 other downstream 2683123 13387550 ~ 13394875 (+) True G944957
TU1079178 other downstream 3360121 14064548 ~ 14065869 (+) True G946426
TU1079304 other downstream 3450927 14155354 ~ 14170877 (+) False LOC110535304
TU1079302 other downstream 3467115 14171542 ~ 14202999 (+) True LOC110535304

Expression Profile