RNA id: TU1074504


Basic Information

Item Value
RNA id TU1074504
length 2872
lncRNA type antisense_over
GC content 0.40
exon number 6
gene id G942140
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 10709833 ~ 10713752 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agcaaaacatgtTGGGACtgtgtcaacaatggactaatgaaacaaatacagaaatattgtttttgggtggagttttcctttaagaaTGTGTCTAAACAATTATGTATCTAAAATTgcatcatattccctatatagtacactacttttgaccagagcccatatggAATAGGGTATAATTTCAGATACAAGCCAACAAGAAAGTATAATCCACAGTGTGaagacacatactgtataataAGGGGTTTCTTAATCACCTCAGAGGTCACAGTAATGGAGTCTGTTGAACTTTTCCTGCTAACTAACGCTTCTACAATATTTTGCCTCATCGTCCTCATCCTCACCTTGTAATTAATGAAAACCAAATAAGCATATTTACAAGTAAAAACAACAAAATCATCTTTGAGGATGAATGACCTACTAAGCAAATGCATGTaccagtaccatagatattattGTTGTCTTTTTAAAGGGAATATTCTTTGTAAAATTGGATAAAATCAGCATTTGGGATAAATAAGGGGACTTCTGACAAGATGAATGCCACATCTATTGCGTGGATAAATATTGTGCCATCATAGCCTACTATTATACATGTTTCCAAGTGAGCAGTTTGATAATAAATACAACATAATGATCTATACTATCTTAACTCTCATCACATACATTCTTAAACCTTTGAGTCTGAGTTTACAGGTCAAGTAAAACATGTAGAACTTttgatatattgttatttttttcttttACAAAAATGCAGAATTGTTCCCTTTTCATGCAGTATACATGTTCCTATGAAGGTAGCTTTGGAGGTCTGTGTTTGCCAGTAGTgatggtgagtgagtgagggagtgtgGGTGGGTTAATGAGGTTAGTTCAGTAGTGGTTGGATGCAGTATTAGTGTCTGCTACAGTGGGGTGCTGCTGTCTGTTGGCAACGCCACTATCCTGCTTGCGTCCCGTACTCTGAACAGCGTGAAGTAACGTTAACAGAATGCTCCCGAAACGTTGGTGAACCCAGTGACCCGTCAcacctgaaagagagagagtatcgTTACAGAGCACGTGCTTAGATGAAACAGATGAACACTCCCATTCTTGTTGAAGGTACATATTTTTCAGAAGGATGGAAAAAAGGAAATGTTTTATGTTATTGCAGCTGTTATGATTGAAGATAAGAAGAATAGCATGAGAGAGGTCGTGTGAATATAATAGGTCGTGTGAATACCAGAGGTCATGTGAATACCAGAGGTCGTGTGAATACCAGAGGTTGTGTGAATACCAGAGGTTGTGTGAATACCAGAGGTTGTGTGAATACCAGAGGTCGTGTGAATACCAGAGGTCGTGTGAATACCAGAGGTCGTGTGAATACCAGAGGTCGTGTGAATACCAGAGGTCGTGTGAATATCAGAGGTCGTGTGAATATCAGAGGTCGTGTGAATATCAGAGGTCGTGTGAATATCAGAGGTCGTGTGAATATCAGAGGTCGTGTGAATATCAGAGGTTGTGTGAATACCAGAGGTCGTGTGAATGGCAGAGGTTGTGTGAATATCAGAGGTTGTGTGAATATCAGAGGTTGTGTGAATGGCAGAGGTTGTGTGAATGGCAGAGGTCGTGTGAATGGAAGGGGTCGTGTGAATACCAGAGGTGGTGTGAATGGCAGGGGTCGTGTGAATATCAGAGGTTGTGTGAATACCAGAGGTCGTGTGAATACCAGAGGTCGTGTGAATGCCAGAGGTCGTGTGAATGCCAGAGGTCGTGTGAATGGCAGAGGTCGTGTGAATGGCAGAGGTCGTGTGAATGCCAGAGGTCGTGTGAATGCCAGAGGTCGTGTGAATGCCAGAGGTCGTGGGAATGGCAGAGGTCGTGTGAATACCAGAGGTCGTGTGAATACCAGAGGTCGTGGGAATGGCAGAGGTCGTGTGAATACCAGAGGTCGTGGGAATGGCAGTCAATGGTTTGTTTGTTATCAGCAGAAGAACCTTTTTCATCTAAACCAACACTTATCAGACACAGATTCAGACAAGCTGCATGCTAAGACATGACCATTTATTTTAAAGGGTTAATAGACTAGGCAGCCTCTGCCAAGCAATATGTCTCTACTACAGCGTACAGAAACTTTGACAATAAGAAATGTAAACTGGTGTCTCTGAGCATCATGCCCTAATAACCAGAAAGAGGGTAAATAATCATATAATGTAGACCAACACACTCATCAAGTAACCCCTCATTTGATAGGAATGAGACAAACTGGCAGTATGAAAACCAGTACGCTCTGAACACTACCAGAGATAATTAAATAGACAATCAAAACCAAACGTGAAATTTAGACAagacagtaaaaaataaatagcaAACACACAACGTTTTAATTGCTTATTGTCAATAATGGTATGAGAAGCTGAAAGGAAATGCAAACATTAGCACCAATAACATTTCCAGAGCAGCCATAACAGGCACAGAAGCCAGCCATGGAAGGCTATAGAGAGACtccatacagtatatagagagactccatacagtatatatagagagactccatacagtatatatagagagactccatacagtatatatagagagactccatacaatatatatagagagagactccatacagaatatatagagagactccatacagtatatagagagactccatacagaatatatagagagagactccatacagtatatatagagagagactccatacagtatatagagagagagactccatacagtatatagagagactccatacagtatatatatagagactccatacagtatatatagagagactccatacagtatatatagagactccatatagtatatatagagactccatacagtgtatatatatagagactcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1074493 lncRNA upstream 2935 10706585 ~ 10706898 (+) True G942138
TU1074489 lncRNA upstream 5406 10697698 ~ 10704427 (+) True G942134
TU1074472 lncRNA upstream 22254 10687364 ~ 10687579 (+) True G942124
TU1074471 lncRNA upstream 22949 10686043 ~ 10686884 (+) True G942123
TU1074451 lncRNA upstream 62545 10646468 ~ 10647288 (+) True G942106
TU1074513 lncRNA downstream 1249 10715001 ~ 10715632 (+) True G942146
TU1074506 lncRNA downstream 16977 10730729 ~ 10733085 (+) True G942141
TU1074969 lncRNA downstream 120697 10834449 ~ 10834721 (+) True G942541
TU1074973 lncRNA downstream 121289 10835041 ~ 10837155 (+) False G942543
TU1074974 lncRNA downstream 122441 10836193 ~ 10837927 (+) False G942543
XM_021619875.2 mRNA upstream 37841 10666551 ~ 10671992 (+) True vapa
NM_001160650.2 mRNA upstream 38248 10666207 ~ 10671585 (+) False vapa
XM_021620141.2 mRNA upstream 70411 10631364 ~ 10639422 (+) True LOC110535252
XM_036934819.1 mRNA upstream 85813 10395438 ~ 10624020 (+) False LOC110536547
XM_021620151.2 mRNA downstream 311885 11025637 ~ 11064599 (+) False LOC110535262
XM_021620152.2 mRNA downstream 325877 11039629 ~ 11064599 (+) True LOC110535262
XM_021620153.2 mRNA downstream 441928 11155680 ~ 11158395 (+) True LOC110535263
XM_036934852.1 mRNA downstream 464580 11178332 ~ 11497838 (+) False LOC110535264
XM_036934853.1 mRNA downstream 464580 11178332 ~ 11497838 (+) False LOC110535264
TU1074217 other upstream 464327 10245109 ~ 10245506 (+) True G941893
TU1072646 other upstream 1854396 8852494 ~ 8855437 (+) True LOC118937463
TU1072537 other upstream 2057312 8651504 ~ 8652521 (+) False G940376
TU1072470 other upstream 2168966 8532540 ~ 8540867 (+) True G940313
TU1072364 other upstream 2270058 8439480 ~ 8439775 (+) True G940247
TU1075144 other downstream 396974 11110726 ~ 11111336 (+) True G942702
TU1077607 other downstream 2673798 13387550 ~ 13394875 (+) True G944957
TU1079178 other downstream 3350796 14064548 ~ 14065869 (+) True G946426
TU1079304 other downstream 3441602 14155354 ~ 14170877 (+) False LOC110535304
TU1079302 other downstream 3457790 14171542 ~ 14202999 (+) True LOC110535304

Expression Profile