RNA id: TU1074973


Basic Information

Item Value
RNA id TU1074973
length 2115
lncRNA type antisense_over
GC content 0.39
exon number 1
gene id G942543
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 10835041 ~ 10837927 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctcattccaaTGACGAGCGTTACAGACAGGGTGTGTCTAGTATTTTCTGCATTACAACAGGGTGCGGCCCGTATTTTATGTGTTAGGACAGAGTGTTGCTCGCAAATGTGTTAGGACACAGTGTTGCTAGTATTTTGTGTTAGGACAGTGTTGCTAGTATTTTATGTGTTAGGACTGTGTTGCTAGTATTTTATGTGTTAGGACAGTGTTGCTAGTATTTTATGTGTTAGGACAGAATGTTGCTAGTATTTTATGTGTTAGGACAGAGTGTTGCTAGTATTTTATGTGTTTGGACAGAGTGTCGCTAGTATTTTGTGTTAGGACTGTGTTGCTAGTATTTTATGTGTTAGGACAGTGTTGCTAGTATTTTATGTGTTAGGACAGAGTGTTGCTAGTATTTTATGTGTTAGGACAGAGTGTTGCTAGTATTTTATGTGTTAGGACAGAGTGTTGCTCGCAAATGTGTTAGGACACAGTGTTGCTAGTATTTTGTGTTAGGACAGTGTTGCTAGTATTTTATGTGTTAGGACTGTGTTGCTAGTATTTTATGTGTTTGGACAGAATGTTGCTAGTATTTTATGTTAGGACAGAATGTTGCTAGTATTTTATGTGTTAGGACAGAATGTTGCTAGTATTTTATGTTAGGACAGAATGTTGCTAGTATTTTATGTGTTAGGACAGAATGTTGCTAGTATTTTATGTTAGGACAGAATGTTGCTAGTATTTTATGTGTTAGGACAGAATGTTGCTAGTATTTTATGTGTTAGGACAGAATGTTGCTAGTATTTTATGTTAGGACAGAATGTTGCTAGTATTTTATGTGTTAGGACAGAATGTTGCTAGTATTTTATGTTAGGACAGAATGTTGCTAGTATTTTATGTTAGGACAGAATGTTTCTAGTATTTTATGTAGTAGGCCATTAAATGAAAAAACAAAGAGACACTTATTTTCAAAAGTCACAACTAGCCATTAGGGCAACTAGTACCAActtcttttttgtttttttatttgtagcTCACATCAATGAAAATAATTCAATTTACTGTCTTTGACTGCAGAGGATGGGCTCACTTTAATGGCTGGAAAAGTATGAATGCATCAAACACATGCAAATGAAAGTAAAATTATCAttacgcgcgcacgcacgcacgcacacgcacacacgcacacacaaatactaTTATCCATGAGCGCTGTAAAGGTAAAGATGACACCATGACAGCAGCTTGGGAATATATAGCAGGCCCACTTGAAGCGCTGCATGaaaaaatcatatatatatatatatatatattctttaacATACCACTAGATGGTGCAAAAAGACGGCATTGTGTATTTATCGGAGCCTACACAGCCATTTGATACAGCAGCCAATGCATGGTCATGAGGTGATCTCAAAATGTCATGCTTTACCTCCCAATTACTAGGCCACATGTGACTCACATCATTAGATGTCCACATGTCATTCTGTGCGCACACCTTGTCACATTGATGTGGGTTATACAGTAATGGAGCTGGGTATGACTAAGACGAGGAGTCATATATCTTATTTGTGGACCTGGGGGGAGGGGGCGCCCCGGCTCACTGATTGTTATTCAAGTTAATGTGTGGGATGCTGAACGGCTTTTTCACCTCCGAAAATGGAAGCTGTAAGCTGTGCTTGGACAGACCTACGAGCTGTTGCGCTGCACTGATGCGCAAGTGatggtgacagggagagagagcggtacaGAGAGATGCTGCTAGATGTTTGGGCGTGTTATATAAACGGCATCTGTCGTTACATAATCCAACTCCGGTCTTAGCAGAAACATCACTCTGCATCTAACCCCTTTTCCTTTTAAAGGTGAACATGGGTTAACTCCTTCCACGGTTAACACTTTCTCACTAAGCGACTGTTTTGATGATGCATAGGTTGTTGATTCTACTCGCCCGAAGTCTTAAGTGTCACATTCCTGATGGTAACACAGTTCCCTGAAAAAAATATTCTATTAACATAAACACTAACAACACACTGGTGTGGGTGGAAATCTCAGGTGGAAATGCCCACTTAGTGAACTGTTCTTATGTTTTTAAAGTTGTCTTGGCCTACAAAAATATGACAGGCGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1074969 lncRNA upstream 320 10834449 ~ 10834721 (+) True G942541
TU1074506 lncRNA upstream 101956 10730729 ~ 10733085 (+) True G942141
TU1074513 lncRNA upstream 119409 10715001 ~ 10715632 (+) True G942146
TU1074502 lncRNA upstream 121289 10709833 ~ 10713752 (+) False G942140
TU1074979 lncRNA downstream 17425 10854580 ~ 10854782 (+) True G942547
TU1074968 lncRNA downstream 35797 10872952 ~ 10873755 (+) True G942540
TU1075002 lncRNA downstream 59878 10897033 ~ 10897998 (+) True G942570
TU1075118 lncRNA downstream 240033 11077188 ~ 11077489 (+) True G942677
TU1075119 lncRNA downstream 240709 11077864 ~ 11078117 (+) True G942678
XM_021619875.2 mRNA upstream 163049 10666551 ~ 10671992 (+) True vapa
NM_001160650.2 mRNA upstream 163456 10666207 ~ 10671585 (+) False vapa
XM_021620141.2 mRNA upstream 195619 10631364 ~ 10639422 (+) True LOC110535252
XM_036934819.1 mRNA upstream 211021 10395438 ~ 10624020 (+) False LOC110536547
XM_021620151.2 mRNA downstream 188482 11025637 ~ 11064599 (+) False LOC110535262
XM_021620152.2 mRNA downstream 202474 11039629 ~ 11064599 (+) True LOC110535262
XM_021620153.2 mRNA downstream 318525 11155680 ~ 11158395 (+) True LOC110535263
XM_036934852.1 mRNA downstream 341177 11178332 ~ 11497838 (+) False LOC110535264
XM_036934853.1 mRNA downstream 341177 11178332 ~ 11497838 (+) False LOC110535264
TU1074217 other upstream 589535 10245109 ~ 10245506 (+) True G941893
TU1072646 other upstream 1979604 8852494 ~ 8855437 (+) True LOC118937463
TU1072537 other upstream 2182520 8651504 ~ 8652521 (+) False G940376
TU1072470 other upstream 2294174 8532540 ~ 8540867 (+) True G940313
TU1072364 other upstream 2395266 8439480 ~ 8439775 (+) True G940247
TU1075144 other downstream 273571 11110726 ~ 11111336 (+) True G942702
TU1077607 other downstream 2550395 13387550 ~ 13394875 (+) True G944957
TU1079178 other downstream 3227393 14064548 ~ 14065869 (+) True G946426
TU1079304 other downstream 3318199 14155354 ~ 14170877 (+) False LOC110535304
TU1079302 other downstream 3334387 14171542 ~ 14202999 (+) True LOC110535304

Expression Profile