RNA id: TU1074974


Basic Information

Item Value
RNA id TU1074974
length 1735
lncRNA type antisense_over
GC content 0.42
exon number 1
gene id G942543
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 10835041 ~ 10837927 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcacacgcacacacgcacacacaaatactaTTATCCATGAGCGCTGTAAAGGTAAAGATGACACCATGACAGCAGCTTGGGAATATATAGCAGGCCCACTTGAAGCGCTGCATGaaaaaatcatatatatatatatatatatattctttaacATACCACTAGATGGTGCAAAAAGACGGCATTGTGTATTTATCGGAGCCTACACAGCCATTTGATACAGCAGCCAATGCATGGTCATGAGGTGATCTCAAAATGTCATGCTTTACCTCCCAATTACTAGGCCACATGTGACTCACATCATTAGATGTCCACATGTCATTCTGTGCGCACACCTTGTCACATTGATGTGGGTTATACAGTAATGGAGCTGGGTATGACTAAGACGAGGAGTCATATATCTTATTTGTGGACCTGGGGGGAGGGGGCGCCCCGGCTCACTGATTGTTATTCAAGTTAATGTGTGGGATGCTGAACGGCTTTTTCACCTCCGAAAATGGAAGCTGTAAGCTGTGCTTGGACAGACCTACGAGCTGTTGCGCTGCACTGATGCGCAAGTGatggtgacagggagagagagcggtacaGAGAGATGCTGCTAGATGTTTGGGCGTGTTATATAAACGGCATCTGTCGTTACATAATCCAACTCCGGTCTTAGCAGAAACATCACTCTGCATCTAACCCCTTTTCCTTTTAAAGGTGAACATGGGTTAACTCCTTCCACGGTTAACACTTTCTCACTAAGCGACTGTTTTGATGATGCATAGGTTGTTGATTCTACTCGCCCGAAGTCTTAAGTGTCACATTCCTGATGGTAACACAGTTCCCTGAAAAAAATATTCTATTAACATAAACACTAACAACACACTGGTGTGGGTGGAAATCTCAGGTGGAAATGCCCACTTAGTGAACTGTTCTTATGTTTTTAAAGTTGTCTTGGCCTACAAAAATATGACAGGCGGGCCTACCACTGGAAAACAGGGCTACATACCTAATCAGACCCATATCTGTGGTTCAGAGCCTACCTTATAGTAAGTCATGTGATCATACTGTAATATATTCATGCTTCCTAATTTATTCAGACTTGATTTCCTCTGAGTCACTGACACTAAATAGTTGAATGCAAATGTTTACCAGGCTTTCCTAATACTGTCAACATGAGGAATCCAGGCTTATTTTATTTTTCAGCACGATGTGCCTGCTATGATGATAAAACGTCCATAACATTTTGATTGGTCCAAGCAGATCCTCAATGTCATTTACAACAAGTGCAGTAAACTTGATTTGGCATGTCAGTGGCATGTCAGACGATCTGTCATGTAGATCAGATGTTCCTGACAGACATGGGATGTAAAACAATGTGACTGTCGATACTCTCATTGCGTCACGTCAAATTTACTGAGACGAGCTGAACGTGGGATAGATGTGCCGCTTTTATCACTGTCAAATAAATTCAGATGTAGAGATTCTCGAAGGAAATGTATTACAAATCCAGAAAAGTAGGTTTAATGAAGacaatagtatatagtatagtaaggATTACCTGTGTGCTGTCCCTGTATACCTTGGTGAACATTAAGATGAAGTACTTTTGTTTGTATATCTTATCTGAACATAAACGGGGCCAGGGAGAGGATGTTGGAAAGGGGTGGCAATAAGCCTACGGTTGAGATAAAAATGTAACATGAGGAATGTATTTCTCTTCCAGGTGAAGAAGCCTATATGCCATCGGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1074969 lncRNA upstream 1472 10834449 ~ 10834721 (+) True G942541
TU1074506 lncRNA upstream 103108 10730729 ~ 10733085 (+) True G942141
TU1074513 lncRNA upstream 120561 10715001 ~ 10715632 (+) True G942146
TU1074504 lncRNA upstream 122441 10709833 ~ 10713752 (+) True G942140
TU1074503 lncRNA upstream 124443 10709833 ~ 10711750 (+) False G942140
TU1074979 lncRNA downstream 16653 10854580 ~ 10854782 (+) True G942547
TU1074968 lncRNA downstream 35025 10872952 ~ 10873755 (+) True G942540
TU1075002 lncRNA downstream 59106 10897033 ~ 10897998 (+) True G942570
TU1075118 lncRNA downstream 239261 11077188 ~ 11077489 (+) True G942677
TU1075119 lncRNA downstream 239937 11077864 ~ 11078117 (+) True G942678
XM_021619875.2 mRNA upstream 164201 10666551 ~ 10671992 (+) True vapa
NM_001160650.2 mRNA upstream 164608 10666207 ~ 10671585 (+) False vapa
XM_021620141.2 mRNA upstream 196771 10631364 ~ 10639422 (+) True LOC110535252
XM_036934819.1 mRNA upstream 212173 10395438 ~ 10624020 (+) False LOC110536547
XM_021620151.2 mRNA downstream 187710 11025637 ~ 11064599 (+) False LOC110535262
XM_021620152.2 mRNA downstream 201702 11039629 ~ 11064599 (+) True LOC110535262
XM_021620153.2 mRNA downstream 317753 11155680 ~ 11158395 (+) True LOC110535263
XM_036934852.1 mRNA downstream 340405 11178332 ~ 11497838 (+) False LOC110535264
XM_036934853.1 mRNA downstream 340405 11178332 ~ 11497838 (+) False LOC110535264
TU1074217 other upstream 590687 10245109 ~ 10245506 (+) True G941893
TU1072646 other upstream 1980756 8852494 ~ 8855437 (+) True LOC118937463
TU1072537 other upstream 2183672 8651504 ~ 8652521 (+) False G940376
TU1072470 other upstream 2295326 8532540 ~ 8540867 (+) True G940313
TU1072364 other upstream 2396418 8439480 ~ 8439775 (+) True G940247
TU1075144 other downstream 272799 11110726 ~ 11111336 (+) True G942702
TU1077607 other downstream 2549623 13387550 ~ 13394875 (+) True G944957
TU1079178 other downstream 3226621 14064548 ~ 14065869 (+) True G946426
TU1079304 other downstream 3317427 14155354 ~ 14170877 (+) False LOC110535304
TU1079302 other downstream 3333615 14171542 ~ 14202999 (+) True LOC110535304

Expression Profile