RNA id: TU1076365


Basic Information

Item Value
RNA id TU1076365
length 218
lncRNA type antisense_over
GC content 0.54
exon number 1
gene id G943827
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 12251980 ~ 12252197 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTTCAGAAGTTTGTCGGCACATTCCTTGTCTCCGCCACCATAGTTCTCTTTGACGTGGAGGGCGTCGTAGGTGAGTGTGTACTCCGTCTCGTCGTTGTAGTTGGGCCCTAAGAGGGTCCGTGCCCAGATGCCCATGTCATACGGCGGCAGCGTGCCACCGAACTCGGACGGCAGACAATCGGGTAGAATTAACTGGTGTAAACTGTTGAGATTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1076345 lncRNA upstream 82534 12168999 ~ 12169446 (+) True G943820
TU1076342 lncRNA upstream 87444 12164268 ~ 12164536 (+) True G943817
TU1076312 lncRNA upstream 129365 12117079 ~ 12122615 (+) True G943787
TU1076309 lncRNA upstream 136819 12114827 ~ 12115161 (+) True G943785
TU1076272 lncRNA upstream 196463 12055140 ~ 12055517 (+) True G943750
TU1076367 lncRNA downstream 49 12252246 ~ 12253319 (+) True G943829
TU1076424 lncRNA downstream 67579 12319776 ~ 12343587 (+) True G943877
TU1076837 lncRNA downstream 128253 12380450 ~ 12381622 (+) True G944232
TU1077052 lncRNA downstream 374403 12626600 ~ 12626805 (+) True G944423
TU1077141 lncRNA downstream 486674 12738871 ~ 12739358 (+) True G944512
XM_036934875.1 mRNA upstream 5623 12193407 ~ 12246357 (+) False LOC110535277
XM_036934881.1 mRNA upstream 5623 12193409 ~ 12246357 (+) False LOC110535277
XM_036934873.1 mRNA upstream 5623 12193411 ~ 12246357 (+) False LOC110535277
XM_036934876.1 mRNA upstream 5623 12193411 ~ 12246357 (+) False LOC110535277
XM_036934886.1 mRNA upstream 5623 12193411 ~ 12246357 (+) False LOC110535277
XM_021620187.2 mRNA downstream 12868 12265065 ~ 12274786 (+) True LOC110535283
XM_021620186.2 mRNA downstream 23085 12275282 ~ 12283257 (+) False LOC110535281
XM_036934899.1 mRNA downstream 23911 12276108 ~ 12283258 (+) True LOC110535281
XM_021620184.2 mRNA downstream 31684 12283881 ~ 12295047 (+) False rmc1
XM_021620185.2 mRNA downstream 31685 12283882 ~ 12295047 (+) False rmc1
TU1075144 other upstream 1140644 11110726 ~ 11111336 (+) True G942702
TU1074217 other upstream 2006474 10245109 ~ 10245506 (+) True G941893
TU1072646 other upstream 3396543 8852494 ~ 8855437 (+) True LOC118937463
TU1072537 other upstream 3599459 8651504 ~ 8652521 (+) False G940376
TU1072470 other upstream 3711113 8532540 ~ 8540867 (+) True G940313
TU1077607 other downstream 1135353 13387550 ~ 13394875 (+) True G944957
TU1079178 other downstream 1812351 14064548 ~ 14065869 (+) True G946426
TU1079304 other downstream 1903157 14155354 ~ 14170877 (+) False LOC110535304
TU1079302 other downstream 1919345 14171542 ~ 14202999 (+) True LOC110535304
TU1079404 other downstream 2058378 14310575 ~ 14314318 (+) True G946644

Expression Profile