RNA id: TU1077247



Basic Information


Item Value
RNA id TU1077247
length 620
lncRNA type intronic
GC content 0.61
exon number 2
gene id G944609
representative True

Chromosome Information


Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 12912440 ~ 12919262 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


agaaggagcagcggggagggaggtgggtacaggtagaacagaaggagcagcggtgagggaggtgggtacaggtagaacagaaggagcagcggtgagggaggtgggtacaggtagaacagaaggagcagcggggagggtggtgggtacaggtagaacagaaggagcagaggggagggagggaggtacaggtagaacagaaggagcagcggggagggagggaggtacaggtagaacagaaggagcagcggggagggagggaggtacaggtagaacagaaggagcagcagggagggaggtgggtacaggtagaacagaaggagcagcggggagggaggtgggtacaggtagaacagaaggagcagcggggagggagggaggtacaggtagaacagaaggagcagcggggagggagggaggtggtgggtacaggtagaacagaaggagcagcggggagtgagggaggtgggtacaggtagaacagaaggagcagggggagggaggtgggtacaggtagaacagaaggagcagcagggagggaggtgggtacaggtagaacagaaggagcagcggggagggagggaggtggtgggtacaggtagaacagaaggagcagcagggag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1077191 lncRNA upstream 10265 12900666 ~ 12902175 (+) True G944560
TU1077142 lncRNA upstream 172216 12739981 ~ 12740224 (+) True G944513
TU1077141 lncRNA upstream 173082 12738871 ~ 12739358 (+) True G944512
TU1077052 lncRNA upstream 285635 12626600 ~ 12626805 (+) True G944423
TU1076837 lncRNA upstream 530818 12380450 ~ 12381622 (+) True G944232
TU1077325 lncRNA downstream 107925 13027187 ~ 13121153 (+) True G944679
TU1077360 lncRNA downstream 165130 13084392 ~ 13084665 (+) True G944714
TU1077318 lncRNA downstream 197360 13116622 ~ 13118471 (+) True G944675
TU1077523 lncRNA downstream 369162 13288424 ~ 13291231 (+) True G944876
TU1077694 lncRNA downstream 564411 13483673 ~ 13483980 (+) True G945040
XM_036934900.1 mRNA upstream 34939 12807576 ~ 12877501 (+) True LOC110535287
LOC110536550 mRNA upstream 118068 12764626 ~ 12794372 (+) True LOC110536550
XM_021620189.2 mRNA upstream 512351 12393373 ~ 12400089 (+) True LOC110535285
XM_021620188.2 mRNA upstream 528154 12370078 ~ 12384286 (+) True LOC110535284
XM_036934897.1 mRNA upstream 617393 12284843 ~ 12295047 (+) True rmc1
XM_021620193.2 mRNA downstream 7349 12926611 ~ 12927478 (+) True LOC110535289
XM_021620196.2 mRNA downstream 127044 13046306 ~ 13094507 (+) True LOC110535293
XM_036934924.1 mRNA downstream 527422 13446684 ~ 13814449 (+) False dpp6a
XM_036934926.1 mRNA downstream 578991 13498253 ~ 13814449 (+) False dpp6a
XM_036934925.1 mRNA downstream 726027 13645289 ~ 13814449 (+) True dpp6a
TU1075144 other upstream 1801104 11110726 ~ 11111336 (+) True G942702
TU1074217 other upstream 2666934 10245109 ~ 10245506 (+) True G941893
TU1072646 other upstream 4057003 8852494 ~ 8855437 (+) True LOC118937463
TU1072537 other upstream 4259919 8651504 ~ 8652521 (+) False G940376
TU1072470 other upstream 4371573 8532540 ~ 8540867 (+) True G940313
TU1077607 other downstream 468288 13387550 ~ 13394875 (+) True G944957
TU1079178 other downstream 1145286 14064548 ~ 14065869 (+) True G946426
TU1079304 other downstream 1236092 14155354 ~ 14170877 (+) False LOC110535304
TU1079302 other downstream 1252280 14171542 ~ 14202999 (+) True LOC110535304
TU1079404 other downstream 1391313 14310575 ~ 14314318 (+) True G946644

Expression Profile