RNA id: TU1077318


Basic Information

Item Value
RNA id TU1077318
length 1802
lncRNA type antisense_over
GC content 0.58
exon number 2
gene id G944675
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 13116622 ~ 13118471 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGAGCTTCTCCTCAGTGTCTCCCAGGTGTGGTAGCATGCTGTTCTGAGTGTCAACGGTGTTTCTGCTAGACTGAGGGATATCATGGGCCTGCCTTTCCGAAGTTTGGGCATAAGGTGTCATTGGACCCAGTTCAAAGGGATCGTGAATCTGCGTTTGACCACCGTGATGATTCGACTGCGGCAGAGAGAAACTTTCATCCGACATTCCTGGGTGCTTAGCTGTCTGCGAGCCCTGGGCGCTTGGACAGGCAAACCCCTGGGACATGGGCGTCGGTCTGGAGCATAGTCGATTGAAGGCATCAGGGCCTGCTTCTGGCCGCGGCGTCCCTGGAGCTTGTGCGTAAGGGTCAGCGAGGAGCGGTCTTGGTGTTCCGGGTTGTTGGGCATACGGGTCCATGTTCCTTTGACTACCGGGGGATTTGGGAAACCTATCCCCTGGGGCTGGTCTGGGGGTACCTGGCATGGAAGCATAAGGATCCATGGAGTGAGATGGAGACGGTCTGTGATTGGGTGGGTGCTGCTGGGGGAACTGGTCTAGACGAAGGCTAGGCGGCGTCTGCAGGTATGAGGGATCTGAGTGTGGCCTTGGGGTGCCGGGAGGTTGAGCATAGCTATCAGAGTGAGGTCTGGGGGTGCCTGGTGGTTGGGTGAAAGGGTCAGACATCTGCTGTGAATAATCCGGTCTCGGGGTAGATGGCGCTTGTGCATACGGGTTTCTGTGAGGGTGTCTAATCATTGGCATGGGTTGAGAGAAATGGCCCTCCTGGGTTTGGCACATCATCTTGGACTCGTTGGGGAACCCTTCCCCCATGAGTGGCCGGGGGGTGAGAGGCTGCTGGGCGTAAGGGTCGGCCTGTATTCCTTGGGGAAAGCCATCAGATGGCCCTCGTTTAAGTCCCCCAGGCATAGGGCCACCGTAGGGCTCTTGCTGGGACTGCTGGGGAGGCATGGGGGCTTTGAACACTGAGACGGAGCCTGACTCGTTGCTGCCAGGGATGGGAGTGAGCAAGGGCCTGGAGTAGGGGTCCGAGAGGATCATGCGGTTGTGAGACATGCGCTGGTAGACCTCGGCTCGGTGTCCGCCCATCCTGGCAAAAGTCTCTCCTCCAGAAGGAGGGCTCATCATGTTGTGCCTGACCTGCTGGTGTTGCTGCTGCTCAACCAGTCCTGAAGGGCCCACCCTGGCGGGTCCCATGGGTTTAACAAAGGGGTCAGGGGGCCTGGGGGTGTCTGGCATCTTAGCATAGGGGTCAGCATTACCAGAAggcctccctcctctttcctgcATCTCCGACAGAGAGTTCTGCCGGGGCGTGGTGGATCCACCACCCCCAGGGGGCGGTCTCGGGGTGCCCACCATTTTGGCGTATGGGTCCCAGGGCGAGGACGGCCGGGAGCCTGAGGAGGAATCCGGGGAAAACATATGTGGTGACTGGGGCTGGGAGGATGGTCCCTGTTGAGGGTACGAGGTCTCCTGGGTGGGCGTCCTCGAGGACGGAGGTGGGAGCTGGGGTCTGAGGAACACGTCATCCTGTGACCCAGAGGTGGGTGTGCCCGGGAGTTGTGGTCTAGCGAAGCCATCCTTAGACACTATTGGCTGCAGTGGGGACGAGTTTCCAGACTTTCCTCCATTGCTGGGCTGAGGAGTCATGGGGCTCTGGTTACCACTATTAGGGGTTGTATCTCCACCTGCCTGACTGCTaaacagctgttgttgttgttgttgttgttgctggagcTGCTCATTTTTAACCTGCTCCAGCTTTTGAGTGGCTTCAATCTTCGCCTGCTGCTTGCTCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1077360 lncRNA upstream 31957 13084392 ~ 13084665 (+) True G944714
TU1077247 lncRNA upstream 197360 12912440 ~ 12919262 (+) True G944609
TU1077191 lncRNA upstream 214447 12900666 ~ 12902175 (+) True G944560
TU1077142 lncRNA upstream 376398 12739981 ~ 12740224 (+) True G944513
TU1077141 lncRNA upstream 377264 12738871 ~ 12739358 (+) True G944512
TU1077523 lncRNA downstream 169953 13288424 ~ 13291231 (+) True G944876
TU1077694 lncRNA downstream 365202 13483673 ~ 13483980 (+) True G945040
TU1077697 lncRNA downstream 370007 13488478 ~ 13488711 (+) True G945043
TU1077700 lncRNA downstream 372749 13491220 ~ 13491487 (+) True G945046
TU1077706 lncRNA downstream 379047 13497518 ~ 13497884 (+) True G945052
XM_021620196.2 mRNA upstream 22115 13046306 ~ 13094507 (+) True LOC110535293
XM_021620193.2 mRNA upstream 189144 12926611 ~ 12927478 (+) True LOC110535289
XM_036934900.1 mRNA upstream 239121 12807576 ~ 12877501 (+) True LOC110535287
LOC110536550 mRNA upstream 322250 12764626 ~ 12794372 (+) True LOC110536550
XM_021620189.2 mRNA upstream 716533 12393373 ~ 12400089 (+) True LOC110535285
XM_036934924.1 mRNA downstream 328213 13446684 ~ 13814449 (+) False dpp6a
XM_036934926.1 mRNA downstream 379782 13498253 ~ 13814449 (+) False dpp6a
XM_036934925.1 mRNA downstream 526818 13645289 ~ 13814449 (+) True dpp6a
XR_005034812.1 mRNA downstream 598256 13716727 ~ 13716783 (+) True LOC118937473
XM_021620204.2 mRNA downstream 705513 13823984 ~ 13848726 (+) True mcur1
TU1075144 other upstream 2005286 11110726 ~ 11111336 (+) True G942702
TU1074217 other upstream 2871116 10245109 ~ 10245506 (+) True G941893
TU1072646 other upstream 4261185 8852494 ~ 8855437 (+) True LOC118937463
TU1072537 other upstream 4464101 8651504 ~ 8652521 (+) False G940376
TU1072470 other upstream 4575755 8532540 ~ 8540867 (+) True G940313
TU1077607 other downstream 269079 13387550 ~ 13394875 (+) True G944957
TU1079178 other downstream 946077 14064548 ~ 14065869 (+) True G946426
TU1079304 other downstream 1036883 14155354 ~ 14170877 (+) False LOC110535304
TU1079302 other downstream 1053071 14171542 ~ 14202999 (+) True LOC110535304
TU1079404 other downstream 1192104 14310575 ~ 14314318 (+) True G946644

Expression Profile