RNA id: TU1077700


Basic Information

Item Value
RNA id TU1077700
length 268
lncRNA type intronic
GC content 0.45
exon number 1
gene id G945046
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 13491220 ~ 13491487 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcatttttacataggtattcctcttgtccagatgagatagggcagtgtgtagtgtgatggcgattgcatcgtcagtgacctattggggcggcaaacaaattggagtgggactagggtatcaggtagggtggaggtgatatgatccttaactagtctctcaaagcacttaatgatgacagaagtgagtgcaacgggcgatagtaatttagttcagttaccttagctttctttggaacaggaacaatggtggccatcttgaagcaaatgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1077697 lncRNA upstream 2509 13488478 ~ 13488711 (+) True G945043
TU1077694 lncRNA upstream 7240 13483673 ~ 13483980 (+) True G945040
TU1077523 lncRNA upstream 199989 13288424 ~ 13291231 (+) True G944876
TU1077325 lncRNA upstream 370067 13027187 ~ 13121153 (+) True G944679
TU1077706 lncRNA downstream 6031 13497518 ~ 13497884 (+) True G945052
TU1077862 lncRNA downstream 181820 13673307 ~ 13673574 (+) True G945200
TU1077921 lncRNA downstream 272299 13763786 ~ 13765449 (+) True G945259
TU1077960 lncRNA downstream 334054 13825541 ~ 13825893 (+) True G945298
TU1077968 lncRNA downstream 372057 13863544 ~ 13869217 (+) True G945306
XM_021620196.2 mRNA upstream 396713 13046306 ~ 13094507 (+) True LOC110535293
XM_021620193.2 mRNA upstream 563742 12926611 ~ 12927478 (+) True LOC110535289
XM_036934900.1 mRNA upstream 613719 12807576 ~ 12877501 (+) True LOC110535287
LOC110536550 mRNA upstream 696848 12764626 ~ 12794372 (+) True LOC110536550
XM_021620189.2 mRNA upstream 1091131 12393373 ~ 12400089 (+) True LOC110535285
XM_036934926.1 mRNA downstream 6766 13498253 ~ 13814449 (+) False dpp6a
XM_036934925.1 mRNA downstream 153802 13645289 ~ 13814449 (+) True dpp6a
XR_005034812.1 mRNA downstream 225240 13716727 ~ 13716783 (+) True LOC118937473
XM_021620204.2 mRNA downstream 332497 13823984 ~ 13848726 (+) True mcur1
XM_021620210.2 mRNA downstream 385314 13876801 ~ 13883235 (+) False LOC110535301
TU1077607 other upstream 96345 13387550 ~ 13394875 (+) True G944957
TU1075144 other upstream 2379884 11110726 ~ 11111336 (+) True G942702
TU1074217 other upstream 3245714 10245109 ~ 10245506 (+) True G941893
TU1072646 other upstream 4635783 8852494 ~ 8855437 (+) True LOC118937463
TU1072537 other upstream 4838699 8651504 ~ 8652521 (+) False G940376
TU1079178 other downstream 573061 14064548 ~ 14065869 (+) True G946426
TU1079304 other downstream 663867 14155354 ~ 14170877 (+) False LOC110535304
TU1079302 other downstream 680055 14171542 ~ 14202999 (+) True LOC110535304
TU1079404 other downstream 819088 14310575 ~ 14314318 (+) True G946644
TU1079403 other downstream 826521 14318008 ~ 14318623 (+) True G946643

Expression Profile