RNA id: TU1079029


Basic Information

Item Value
RNA id TU1079029
length 212
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G946278
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 13931687 ~ 13931898 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtggagcgatgggtaacgctgcttcgagggtggctgttgtcgttgtgttcctggttcgaggcGAGgaggggacggaagctatactgttacactggcaatactatagtgcctataagaacatccaatagtcaaaggtatatgaaatacaaatatattaactacaacctaaaacctcttggttggaatattgaagtctcatgttaaaaggaacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1077968 lncRNA upstream 62470 13863544 ~ 13869217 (+) True G945306
TU1077960 lncRNA upstream 105794 13825541 ~ 13825893 (+) True G945298
TU1077921 lncRNA upstream 166238 13763786 ~ 13765449 (+) True G945259
TU1077862 lncRNA upstream 258113 13673307 ~ 13673574 (+) True G945200
TU1077706 lncRNA upstream 433803 13497518 ~ 13497884 (+) True G945052
TU1079031 lncRNA downstream 3154 13935052 ~ 13935276 (+) True G946280
TU1079055 lncRNA downstream 20576 13952474 ~ 13952696 (+) True G946304
TU1079109 lncRNA downstream 61421 13993319 ~ 13993572 (+) True G946357
TU1079123 lncRNA downstream 69945 14001843 ~ 14002162 (+) True G946371
TU1079124 lncRNA downstream 70436 14002334 ~ 14002603 (+) True G946372
XM_021620210.2 mRNA upstream 48452 13876801 ~ 13883235 (+) False LOC110535301
XM_021620208.2 mRNA upstream 48452 13876807 ~ 13883235 (+) False LOC110535301
XM_021620211.2 mRNA upstream 48452 13877176 ~ 13883235 (+) False LOC110535301
XM_021620213.2 mRNA upstream 48452 13879459 ~ 13883235 (+) False LOC110535301
XM_021620212.2 mRNA upstream 48452 13879464 ~ 13883235 (+) True LOC110535301
XM_021620216.2 mRNA downstream 189502 14121400 ~ 14207555 (+) True LOC110535303
XM_036934930.1 mRNA downstream 222886 14154784 ~ 14176781 (+) False LOC110535304
XR_005034573.1 mRNA downstream 222886 14154784 ~ 14176930 (+) False LOC110535304
XR_005034566.1 mRNA downstream 222886 14154784 ~ 14202957 (+) False LOC110535304
XR_005034567.1 mRNA downstream 222886 14154784 ~ 14202957 (+) False LOC110535304
TU1077607 other upstream 536812 13387550 ~ 13394875 (+) True G944957
TU1075144 other upstream 2820351 11110726 ~ 11111336 (+) True G942702
TU1074217 other upstream 3686181 10245109 ~ 10245506 (+) True G941893
TU1072646 other upstream 5076250 8852494 ~ 8855437 (+) True LOC118937463
TU1072537 other upstream 5279166 8651504 ~ 8652521 (+) False G940376
TU1079178 other downstream 132650 14064548 ~ 14065869 (+) True G946426
TU1079304 other downstream 223456 14155354 ~ 14170877 (+) False LOC110535304
TU1079302 other downstream 239644 14171542 ~ 14202999 (+) True LOC110535304
TU1079404 other downstream 378677 14310575 ~ 14314318 (+) True G946644
TU1079403 other downstream 386110 14318008 ~ 14318623 (+) True G946643

Expression Profile