RNA id: TU1079142


Basic Information

Item Value
RNA id TU1079142
length 437
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G946390
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 14019324 ~ 14019760 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cactctggatgaactgcagagatctacagctgaggtgggagactttgtccataggacaacaatcagtcgtatattgcacaaatctggcctttatggaagagtggcaagaagaaagccatttcttaaagatatccataaaaagtgttgtttaaagtttgccaaaagccacctgggagacacaccaaacatgtggaagaaggtgctctggtcagatgaaaccaaaatggaactttttggcaacaatgcaaaacgttatgtttggcgtaaaagcaacacagctgaacacaccatccccactgtcaaacatggtggtggcagcatcatggtttgggactgcatttcttcagcagggacagggaagatggttaaaattgatgggaagatggttaaaattgatgggaagatggatggagccaaatacaggactattctggaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1079129 lncRNA upstream 12007 14006606 ~ 14007317 (+) True G946377
TU1079126 lncRNA upstream 15847 14003180 ~ 14003477 (+) True G946374
TU1079124 lncRNA upstream 16721 14002334 ~ 14002603 (+) True G946372
TU1079123 lncRNA upstream 17162 14001843 ~ 14002162 (+) True G946371
TU1079109 lncRNA upstream 25752 13993319 ~ 13993572 (+) True G946357
TU1079299 lncRNA downstream 92533 14112293 ~ 14112513 (+) True G946545
TU1079303 lncRNA downstream 94323 14114083 ~ 14114567 (+) True G946549
TU1079371 lncRNA downstream 220076 14239836 ~ 14240314 (+) True G946616
TU1079390 lncRNA downstream 257279 14277039 ~ 14278140 (+) True G946635
TU1079423 lncRNA downstream 281210 14300970 ~ 14301208 (+) True G946663
XM_021620210.2 mRNA upstream 136089 13876801 ~ 13883235 (+) False LOC110535301
XM_021620216.2 mRNA downstream 101640 14121400 ~ 14207555 (+) True LOC110535303
XM_036934930.1 mRNA downstream 135024 14154784 ~ 14176781 (+) False LOC110535304
XR_005034573.1 mRNA downstream 135024 14154784 ~ 14176930 (+) False LOC110535304
XR_005034566.1 mRNA downstream 135024 14154784 ~ 14202957 (+) False LOC110535304
XR_005034567.1 mRNA downstream 135024 14154784 ~ 14202957 (+) False LOC110535304
TU1077607 other upstream 624449 13387550 ~ 13394875 (+) True G944957
TU1075144 other upstream 2907988 11110726 ~ 11111336 (+) True G942702
TU1074217 other upstream 3773818 10245109 ~ 10245506 (+) True G941893
TU1072646 other upstream 5163887 8852494 ~ 8855437 (+) True LOC118937463
TU1072537 other upstream 5366803 8651504 ~ 8652521 (+) False G940376
TU1079178 other downstream 44788 14064548 ~ 14065869 (+) True G946426
TU1079304 other downstream 135594 14155354 ~ 14170877 (+) False LOC110535304
TU1079302 other downstream 151782 14171542 ~ 14202999 (+) True LOC110535304
TU1079404 other downstream 290815 14310575 ~ 14314318 (+) True G946644
TU1079403 other downstream 298248 14318008 ~ 14318623 (+) True G946643

Expression Profile