RNA id: TU1079454


Basic Information

Item Value
RNA id TU1079454
length 219
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G946691
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 14400804 ~ 14401022 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atctcaaccacactgcacactgccctaacccatctggacaagaggaatacctatgtgagaatgctgttcattgactacagctcggcattcaacaccatagtaccttccaagctcgtcatcaagctcgagaccctgggtctcgaccccgccctgtgcaactgggtactggacttcctaacgggccgcccccaggtggtgagggtaggcaacaacatctcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1079409 lncRNA upstream 64182 14334335 ~ 14336622 (+) True G946649
TU1079406 lncRNA upstream 91019 14307701 ~ 14309785 (+) True G946646
TU1079424 lncRNA upstream 98884 14301667 ~ 14301920 (+) True G946664
TU1079423 lncRNA upstream 99596 14300970 ~ 14301208 (+) True G946663
TU1079390 lncRNA upstream 122664 14277039 ~ 14278140 (+) True G946635
TU1079457 lncRNA downstream 1918 14402940 ~ 14403169 (+) True G946694
TU1079459 lncRNA downstream 5386 14406408 ~ 14406709 (+) True G946696
TU1079441 lncRNA downstream 41732 14442754 ~ 14444395 (+) True G946678
TU1079470 lncRNA downstream 58984 14460006 ~ 14460219 (+) True G946706
TU1079476 lncRNA downstream 66256 14467278 ~ 14467614 (+) True G946712
XM_036934945.1 mRNA upstream 5898 14372633 ~ 14394906 (+) False LOC110535311
XM_036934946.1 mRNA upstream 5898 14372633 ~ 14394906 (+) False LOC110535311
XM_036934947.1 mRNA upstream 5898 14372633 ~ 14394906 (+) True LOC110535311
XM_036934937.1 mRNA upstream 39311 14340137 ~ 14361493 (+) False oplah
XM_036934935.1 mRNA upstream 39311 14340138 ~ 14361493 (+) False oplah
XM_036934951.1 mRNA downstream 4988 14406010 ~ 14421353 (+) False si:ch211-217a12.1
XM_036934952.1 mRNA downstream 4991 14406013 ~ 14421353 (+) False si:ch211-217a12.1
XM_036934949.1 mRNA downstream 7345 14408367 ~ 14421353 (+) False si:ch211-217a12.1
XM_036934950.1 mRNA downstream 7345 14408367 ~ 14421353 (+) True si:ch211-217a12.1
XM_021620237.2 mRNA downstream 24443 14425465 ~ 14433808 (+) False emc9
TU1079453 other upstream 531 14399862 ~ 14400273 (+) True G946690
TU1079402 other upstream 71468 14318665 ~ 14329336 (+) True G946642
TU1079403 other upstream 82181 14318008 ~ 14318623 (+) True G946643
TU1079404 other upstream 86486 14310575 ~ 14314318 (+) True G946644
TU1079302 other upstream 197805 14171542 ~ 14202999 (+) True LOC110535304
TU1079455 other downstream 232 14401254 ~ 14401644 (+) True G946692
TU1079817 other downstream 181521 14582543 ~ 14584049 (+) True G946999
TU1079869 other downstream 264704 14665726 ~ 14669756 (+) False LOC110535322
TU1080168 other downstream 485592 14886614 ~ 14887282 (+) True G947301
TU1080689 other downstream 884157 15285179 ~ 15299373 (+) True spata13

Expression Profile