RNA id: TU1080072


Basic Information

Item Value
RNA id TU1080072
length 210
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G947207
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 14742351 ~ 14742560 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAATAAGGAAGGCTTAAGGTTCTGTTCGCCTGAGTTAGAAttcctcatgataagctgtagaccacactatttacaaaGAGAAGTTCCATCTTTATTTtttatagctgtctatttaccacatTAAATCAATGCGGGCATTAAGACTGCACTCAAGCagcaaattgtatttgtcacatgcgtcgaatacaacaggtatgaaatgctttaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1079896 lncRNA upstream 20181 14721966 ~ 14722170 (+) True G947059
TU1079894 lncRNA upstream 23668 14718448 ~ 14718683 (+) True G947057
TU1079876 lncRNA upstream 26933 14714355 ~ 14715418 (+) True LOC110535322
TU1079885 lncRNA upstream 46021 14696113 ~ 14696330 (+) True G947048
TU1079866 lncRNA upstream 70393 14665726 ~ 14671958 (+) False LOC110535322
TU1080118 lncRNA downstream 30809 14773369 ~ 14773842 (+) True G947252
TU1080120 lncRNA downstream 31443 14774003 ~ 14777036 (+) True G947254
TU1080145 lncRNA downstream 53883 14796443 ~ 14796731 (+) True G947278
TU1080150 lncRNA downstream 65902 14808462 ~ 14808661 (+) True G947283
TU1080153 lncRNA downstream 69771 14812331 ~ 14812543 (+) True G947286
XM_021620251.2 mRNA upstream 26928 14698984 ~ 14715423 (+) False LOC110535322
NM_001124627.1 mRNA downstream 50635 14793195 ~ 14794694 (+) True crf
trnay-gua-3 mRNA downstream 88216 14830776 ~ 14830861 (+) True trnay-gua-3
XM_021620256.2 mRNA downstream 98093 14840653 ~ 14882192 (+) False LOC110535327
XM_021620258.2 mRNA downstream 98093 14840653 ~ 14882192 (+) False LOC110535327
XM_021620259.2 mRNA downstream 98093 14840653 ~ 14882192 (+) True LOC110535327
TU1079869 other upstream 72595 14665726 ~ 14669756 (+) False LOC110535322
TU1079817 other upstream 158302 14582543 ~ 14584049 (+) True G946999
TU1079455 other upstream 340707 14401254 ~ 14401644 (+) True G946692
TU1079453 other upstream 342078 14399862 ~ 14400273 (+) True G946690
TU1079402 other upstream 413015 14318665 ~ 14329336 (+) True G946642
TU1080168 other downstream 144054 14886614 ~ 14887282 (+) True G947301
TU1080689 other downstream 542619 15285179 ~ 15299373 (+) True spata13
TU1080897 other downstream 695121 15437681 ~ 15439862 (+) False LOC110535338
TU1080898 other downstream 695121 15437681 ~ 15439862 (+) True LOC110535338
TU1080953 other downstream 845270 15587830 ~ 15589776 (+) True rnf6

Expression Profile