RNA id: TU1080826



Basic Information


Item Value
RNA id TU1080826
length 319
lncRNA type intronic
GC content 0.34
exon number 1
gene id G947893
representative True

Chromosome Information


Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 15365287 ~ 15365605 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


catcatcatagtcCTTTTCattatcgtcatcatcatcatagtcctcaacatcatcatcatcatagtctttttcgttatcatcatcatcatcatcatcatagtccttatcatcatcatcatagtcctTTTCattatcgtcatcatcatcatagtccttaacatcatcatcatcatagtcttTTTCattatcatcatcctcatcatagtcctcatcatcatcatcatcattttcctcctcatcatcatcatagtcctTATCATCATCATCGTAGTCCTTTTCattatcatcatcgtcatcatagTCCttttcattatcatc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1080821 lncRNA upstream 9475 15354252 ~ 15355812 (+) True LOC110536557
TU1080820 lncRNA upstream 11356 15353693 ~ 15353931 (+) False LOC110536557
TU1080727 lncRNA upstream 25377 15339667 ~ 15339910 (+) True G947813
TU1080725 lncRNA upstream 27096 15337924 ~ 15338191 (+) True G947811
TU1080724 lncRNA upstream 27492 15337504 ~ 15337795 (+) True G947810
TU1080829 lncRNA downstream 2674 15368279 ~ 15368648 (+) True G947896
TU1080831 lncRNA downstream 3315 15368920 ~ 15369398 (+) True G947898
TU1080891 lncRNA downstream 62325 15427930 ~ 15428384 (+) True G947951
TU1080892 lncRNA downstream 64982 15430587 ~ 15430880 (+) True G947952
TU1080900 lncRNA downstream 70721 15436326 ~ 15437618 (+) True G947956
XM_036934985.1 mRNA upstream 28097 15320582 ~ 15337190 (+) True tmprss7
XM_036934981.1 mRNA upstream 45041 15285042 ~ 15320246 (+) False spata13
XM_036936644.1 mRNA downstream 10055 15375660 ~ 15478222 (+) False LOC110535338
XM_021620280.2 mRNA downstream 112980 15478585 ~ 15479868 (+) True urad
XM_021620284.2 mRNA downstream 131856 15497461 ~ 15518161 (+) False lnx2a
XM_021620283.2 mRNA downstream 131857 15497462 ~ 15518161 (+) True lnx2a
XM_036934991.1 mRNA downstream 164570 15530175 ~ 15534688 (+) False usp12a
TU1080689 other upstream 65914 15285179 ~ 15299373 (+) True spata13
TU1080168 other upstream 478005 14886614 ~ 14887282 (+) True G947301
TU1079869 other upstream 695531 14665726 ~ 14669756 (+) False LOC110535322
TU1079817 other upstream 781238 14582543 ~ 14584049 (+) True G946999
TU1079455 other upstream 963643 14401254 ~ 14401644 (+) True G946692
TU1080897 other downstream 72076 15437681 ~ 15439862 (+) False LOC110535338
TU1080898 other downstream 72076 15437681 ~ 15439862 (+) True LOC110535338
TU1080953 other downstream 222225 15587830 ~ 15589776 (+) True rnf6
TU1080943 other downstream 286369 15651974 ~ 15659462 (+) False atp8a2
TU1081090 other downstream 381768 15747373 ~ 15793034 (+) True boc

Expression Profile