RNA id: TU1081034


Basic Information

Item Value
RNA id TU1081034
length 4412
lncRNA type antisense_over
GC content 0.47
exon number 2
gene id G948049
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 15695190 ~ 15699638 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTCAATATAGTTTAATAGCACTGTATAAAAAGGCTTTTTAAATAACTGGTATAtgaatacatttatgtttttgtAATTTGTCattttacattcacttaggttggagtcattaaaactcatttttcaaccactccacaaatgtcttgttaacaaactatagttttggcaagttcggttaagacatctactttgtgcatgacacaagtattttttccaacaattgttcacagacagattatttcacttataattcactgtatcacaattccagtgggtcagaagtttacatacacaaagttgactgtgcctttaaacagcttggaaaattccagaaaatgatgtcatggctttagaagcttcttttAGCTTTagaggctaattgacaacatttggaatgtgtacctgtggatctatttcaaggcttaccttcaaactcagtgcctctttgctttacatcatgggaaaatcaaaaaatcagccaagatctcagaaaaaaaaattgtagacagaccacaggtctggttcatccttgggagcaatttccaaacgcctgaaggtaccacgttcatctgtacaaacaatagtacgcaagtataaacaccatgggaccacgcagccgtcataccgctcaggaaggagacgcgttctgtctcctagagatgaacatactttggtgcgaaaagtgcaaatcaatcccagaacaacagcaaaggaccttgtgaagatgctggaggaaaccggtacaaaagtatctatatccacagtaaaacgagtcctacatcgacataacctgaaaggccgctcagcaaggaagcagccactgctccaaaaccaccataaaaaagccagactacggtttgcaactgcacatggggacaaagatcatactttttggagaaatgtcctctgctctgatgaaacacaaatagaactgtttggccataatgaccatcgttatgtttggaggaaaaagggggaggcttgcaagtcgaagaacaccatcccaactgtgaagcatgggggtggcagcatcatgttgtgggggtgctttgctgcaggagggactggtgcacttcacaaaatcgatggcatcatgtggatatattgaagcaacatctcaagacatcagtcaggaagttaaagcttggtcacaaatgggtctttcaaatggacaatgaccccaagcatacttccaaagttgtggcaaaatggcttaaggacaacaaagtcaaggtattggagtggccatcacaaagcccggacctcaatcctatagaaaatgtatgagcagaactgaaaaagtgtgtgcgagcaacaaggaggaatgggccaaaattcacccgacttattgtgggaagcttgtggaaggctacccaaaatatttgacccaagttaaacaatttaaaggcaatgctaccaaatattaattgagtatatgtaaacttctgacccactgggaatgtgatgaaataaataaaatctgaaataaatcattctctctactattattctgacatttcacattcttaaaataaagtggtgatcctaactgacctaagacagggaatttttactaggattaaatgtcaggaattgtgaaaaactgagtttaaatgtatttggctaaggtgtatgtaaacttccgacttcaactgtagctaggcgggacaaccacatatcacagtcttAAGTACATTTTCCTCAGTTATCAGCGAAGTCGGTGCTCGTAGGAAAAGTTGGGTGCAAGGTTTCTATTTAATTCTTTAATTACATTTTGATTGAACTATATCAGCTAAGGTTCTGTGCATTGTTGGACAAACATAGAAGACATAATGCTGCTGTTTAGGTTGATAGATAAATAACTGAACAAGGATTGTGAGTGAGAGAATGAACACGGTCTATGTCTCGCTCTATAGCTGGGATTTAATAACGTTGGAGTCCGCCACACCTCATCATGCTGTACATGTGAAGACAGCTTTCTGGTTCTGAAGAACCTTTTTCAATCATGCGGGTGCCATAATCTATGCCTGAATACCAGCTTGTTGCTTCTGGTATTAAATCCTACCAAGTGAGACTTCAGCCCATTTCGGATGGGATTAGTTTTACCGGGGGAACTCAGGTAATATAATTATGTGCACGAGCACAAatcaccacatctgtcattttagTCCTGTCCGAATCTGCCATGTCAGTCATTTTTACTTGGTAGGAAGGTTGTTATCCCAGCCCCTAAAAACCTACTGTTTTTCAGAAAACTCCCAGGTCCTCTGATAATACTTATCCCGTGTGAATCGTCATCCATGTGTTTTGAGTTAAACAGGTACTGCGCCCAGTATGGGTAAGAATTTGGGAACAAAGTGCTATGCACGTAGCCTACAGATGAATGAAccgttttttttcttcacaaatCAACTTTCCCAGAGTCATACTTCCCTTTTAAATGAAGTGGATGATATTGTGCCAATGAAAAGCTAAATTGCCAGATCCGTCAGGTAATTAAGTGTCTGCGTAGGTTACAGTTCATGGTTCTTACTGATATCCATAGTAGAGCCTCCAGGCTTCCGTCATAACGGTacattttgaatgagaaaaaaaataacatttacagGGGCAGTTTGGTAAAACTAATCCCGTCCGAATGGTCCATGGGGTAAAACGGACATGCTGGGGCAATAATTACATGACCTACGTTCCATAATAATACTAGTCCCGTGCGAATAGGGTTTTTAGAAAACTTCACAGTCCCTCTCAGCCACAGCAGAGATCCTCCTTGTCTTGTAGATGAACTTGACCTGGCAACGTGTCCCTGGGGTCGTGACCCTGAAGCAGCAGCCCCCGTCCTGTAGTGTGGCAGAGTGTCTCTGAGACACCTGCTCCAGCTCTGTCCCGCACGccctcccctgcctctcctctctcatccacaCTGTCTCGCCCTCTACTGCCAAAACCAACACTGTCCCCCCTAAACCCTGCACCTCGCCCACCCCCTGCTCCTGCAGtccagacacacgcacacactgcgGCTCGTGTACCTCAAAGTACTGGCCCCTGTCATAGCCGCGGCAGCTAACACTGATAAGAAAGGAGGCTGGCTCGGAGGTGACAAATTGGAGGACTTCCTCTATCCCGTTGTCGATGGCGACTGGGCCCCTGACCCTTTCTCCCCAGCGTATCTCTGGCCCTCCGAAGATCCGTACTTTCTCTGGGACAAGCTGGAAGCTGTGATGCTCCCCTGGCTTCAGGTAGCTCTCCAGACCCAACATAGTGTCTTTATGCAGCTCCTGTAAGTTAAGCAGGCCCCACCTGACCGGGTCATACTTTACCACAGACAGAACCCTGTGTCTCACCCCAGCATCAAAGCTCTGGGGGCCGAACGCCGGCCGGGCCAGGGTTGAGCAGATGTGCTGGGTGATGGTAGCAATAGGAGCCTGGGAGAGATCTATGGAGGTAGTGTTTTCTTGTGGGTGCACCCTGTCCAGCAGACGTGTGATGCAAAGGCAGAGATCTCTGTACTGGATGGGGAGACCAGCTGGGACTGGGTGTTTGGAGGGAGCTCCGTGTCCCAGTGCTTTGCGGATGACCCGTGCAGGCAGGCCCTGGAAACGGGTGACTCTATGGAGTCTGCGAGAGCGGCAGGGGTACACAGCCCCCTCTTCAGGAGGGGAGAGGCACAGACTGTCCTGAAGAGGGTGGAGATCACGTAGCAACTGAGCTAGTACTGTAACACTCTGTAACAGGCTCTCAGTTCCCCCGTCTGCCCAGCATTCCTCCAACTCCTGGAGAAGCTCTGTCTCCACTCTCTCACTGTCTCGTAACAGACGGACAGCATCCCTAGGTTCCCACAATGATTCCACTGCAGCcccaggatcctccagagcctCTGCCATGCTGTCCCACAGGACCAAGCTAAAGATGTTCCACACTTTGTCTATGTGGTCCCCAGTGTGGAGATGGTCCCCAGCTCGCAGGTGGTGGTCCACAGTGCAGAGGTGGTCCCCAGCTTGCAGGTGGTGGTGGTCCCCAGTGCGGAGAAAGGCCTCAGCCACAGACAGCAGCTTCAGTAACATACATCCCCTCTCAGAGAGCAGCACCCCTAAAAGCAACAAAACAGTTACTGATAGGTAGATAGAGAAGTACCTGATACAAATAGACAAATAAGTAAGTAGTGAGACCTACGCTTTGCTGTGCACTCTGCCACCCTGTTTAGCAGCCTAGAGGCATCCTGGGTCTTACTGAGGAAGAGGGTGACCAGGGCCCTGAGCTGAACGATGTCCCCCACCTCAACCTCCTCCAACAGGCACTCTCTGACGGTCCTCCTGGGCAGACCCACTGCCACCCCCAGCTCACACACATTCAGCCTGGCCCCCTCACCTGGAGCCACAGCCAGCAGGGACAGCACCTGCTGGAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1080938 lncRNA upstream 34827 15659011 ~ 15660363 (+) False atp8a2
TU1080942 lncRNA upstream 34827 15659011 ~ 15660363 (+) False atp8a2
TU1080944 lncRNA upstream 34827 15659011 ~ 15660363 (+) False atp8a2
TU1080945 lncRNA upstream 34827 15659011 ~ 15660363 (+) False atp8a2
TU1080946 lncRNA upstream 34827 15659011 ~ 15660363 (+) False atp8a2
TU1081083 lncRNA downstream 29052 15728690 ~ 15728894 (+) True G948092
TU1081109 lncRNA downstream 79347 15778985 ~ 15781343 (+) True G948115
TU1081110 lncRNA downstream 79995 15779633 ~ 15780297 (+) True G948116
TU1081340 lncRNA downstream 127660 15827298 ~ 15828220 (+) True G948318
TU1081371 lncRNA downstream 194806 15894444 ~ 15894934 (+) True G948347
XM_021620297.2 mRNA upstream 76 15688261 ~ 15695114 (+) False spice1
XM_021620298.2 mRNA upstream 76 15688261 ~ 15695114 (+) False spice1
XR_002475244.2 mRNA upstream 76 15688261 ~ 15695114 (+) True spice1
XM_021620299.2 mRNA upstream 436 15688260 ~ 15694754 (+) False spice1
XM_036935001.1 mRNA upstream 36253 15594416 ~ 15658937 (+) False atp8a2
XM_036935014.1 mRNA downstream 47512 15747150 ~ 15800515 (+) False boc
XM_036935015.1 mRNA downstream 117737 15817375 ~ 15839784 (+) True atp6v1ab
XM_036935017.1 mRNA downstream 142210 15841848 ~ 15857765 (+) False gramd1c
XM_036935018.1 mRNA downstream 142213 15841851 ~ 15857765 (+) True gramd1c
XM_021620314.2 mRNA downstream 158881 15858519 ~ 15865400 (+) False zdhhc23b
TU1080943 other upstream 35728 15651974 ~ 15659462 (+) False atp8a2
TU1080953 other upstream 105414 15587830 ~ 15589776 (+) True rnf6
TU1080897 other upstream 255328 15437681 ~ 15439862 (+) False LOC110535338
TU1080898 other upstream 255328 15437681 ~ 15439862 (+) True LOC110535338
TU1080689 other upstream 395817 15285179 ~ 15299373 (+) True spata13
TU1081090 other downstream 47735 15747373 ~ 15793034 (+) True boc
TU1081573 other downstream 354427 16054065 ~ 16054638 (+) True G948524
TU1081554 other downstream 373778 16073416 ~ 16083282 (+) False sh3kbp1
TU1081677 other downstream 510291 16209929 ~ 16210840 (+) False ccl20b
TU1081665 other downstream 623712 16323350 ~ 16326407 (+) True G948587

Expression Profile