Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU1081604 |
| length | 298 |
| lncRNA type | intronic |
| GC content | 0.41 |
| exon number | 2 |
| gene id | G948545 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_048575.1 |
| NCBI id | CM023229.2 |
| chromosome length | 86280908 |
| location | 16136747 ~ 16173715 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU1081552 | lncRNA | upstream | 38250 | 16090404 ~ 16098497 (+) | True | sh3kbp1 |
| TU1081593 | lncRNA | upstream | 47773 | 16088465 ~ 16088974 (+) | True | G948542 |
| TU1081541 | lncRNA | upstream | 131827 | 16004710 ~ 16004920 (+) | True | G948494 |
| TU1081533 | lncRNA | upstream | 150968 | 15984758 ~ 15985779 (+) | True | G948486 |
| TU1081529 | lncRNA | upstream | 156020 | 15980520 ~ 15980727 (+) | True | G948482 |
| TU1081602 | lncRNA | downstream | 16117 | 16157571 ~ 16171306 (+) | True | G948545 |
| TU1081616 | lncRNA | downstream | 32838 | 16174292 ~ 16174572 (+) | True | G948554 |
| TU1081678 | lncRNA | downstream | 68937 | 16210391 ~ 16210840 (+) | True | ccl20b |
| TU1081661 | lncRNA | downstream | 124692 | 16266146 ~ 16278483 (+) | True | G948583 |
| TU1081655 | lncRNA | downstream | 156902 | 16298356 ~ 16298602 (+) | True | G948577 |
| XM_021620321.2 | mRNA | upstream | 38248 | 16073327 ~ 16098499 (+) | False | sh3kbp1 |
| XM_021620322.2 | mRNA | upstream | 38248 | 16073327 ~ 16098499 (+) | False | sh3kbp1 |
| XM_021620323.2 | mRNA | upstream | 38248 | 16073327 ~ 16098499 (+) | False | sh3kbp1 |
| XM_021620318.2 | mRNA | upstream | 38248 | 16073330 ~ 16098499 (+) | False | sh3kbp1 |
| XM_021620324.2 | mRNA | upstream | 39550 | 16073315 ~ 16097197 (+) | False | sh3kbp1 |
| NM_001124254.1 | mRNA | downstream | 68537 | 16209991 ~ 16211192 (+) | False | ccl20b |
| XM_036935025.1 | mRNA | downstream | 100127 | 16241581 ~ 16253322 (+) | False | tfr1b |
| XR_005034583.1 | mRNA | downstream | 100127 | 16241581 ~ 16253322 (+) | True | tfr1b |
| XM_036935026.1 | mRNA | downstream | 112555 | 16254009 ~ 16274994 (+) | False | tnk2a |
| XM_036935027.1 | mRNA | downstream | 112579 | 16254033 ~ 16274994 (+) | False | tnk2a |
| TU1081554 | other | upstream | 53465 | 16073416 ~ 16083282 (+) | False | sh3kbp1 |
| TU1081573 | other | upstream | 82109 | 16054065 ~ 16054638 (+) | True | G948524 |
| TU1081090 | other | upstream | 343713 | 15747373 ~ 15793034 (+) | True | boc |
| TU1080943 | other | upstream | 477285 | 15651974 ~ 15659462 (+) | False | atp8a2 |
| TU1080953 | other | upstream | 546971 | 15587830 ~ 15589776 (+) | True | rnf6 |
| TU1081677 | other | downstream | 68475 | 16209929 ~ 16210840 (+) | False | ccl20b |
| TU1081665 | other | downstream | 181896 | 16323350 ~ 16326407 (+) | True | G948587 |
| TU1081649 | other | downstream | 191603 | 16333057 ~ 16335292 (+) | True | LOC110535372 |
| TU1081652 | other | downstream | 402361 | 16543815 ~ 16545289 (+) | False | LOC110535387 |
| TU1081800 | other | downstream | 412746 | 16554200 ~ 16601892 (+) | True | G948710 |
