RNA id: TU1082240


Basic Information

Item Value
RNA id TU1082240
length 233
lncRNA type intronic
GC content 0.36
exon number 1
gene id G949111
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 17387135 ~ 17387367 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atatgcactcactactgtaagttgctctgggtaagagtgtctgctaaatgactaaaatgtaaatgtaagctCCTCTTCTGACAATAAAATATATCTACTCAATTATTTCCTTCCTCTGATGTTTCTAGAAAaaatatctctctcatcgtcactcaatgcataggtttacctccactgtattcacatcctaccatacctttgtctgtacattatgccttgaatctattctaccg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1082234 lncRNA upstream 27757 17359137 ~ 17359378 (+) True G949105
TU1082232 lncRNA upstream 30731 17356018 ~ 17356404 (+) True G949103
TU1082212 lncRNA upstream 59369 17327472 ~ 17327766 (+) True LOC110536567
TU1082203 lncRNA upstream 73862 17313051 ~ 17313273 (+) True G949087
TU1082196 lncRNA upstream 84352 17302337 ~ 17302783 (+) False LOC110536567
TU1082250 lncRNA downstream 15985 17403352 ~ 17403588 (+) True G949120
TU1082268 lncRNA downstream 41123 17428490 ~ 17459732 (+) True G949136
TU1082315 lncRNA downstream 126454 17513821 ~ 17520003 (+) True G949183
TU1082322 lncRNA downstream 129548 17516915 ~ 17518259 (+) True G949186
TU1082391 lncRNA downstream 247611 17634978 ~ 17636793 (+) True G949255
XM_036935091.1 mRNA upstream 17926 17356706 ~ 17369209 (+) False ezh2
XM_036935090.1 mRNA upstream 17926 17357392 ~ 17369209 (+) False ezh2
XM_036935088.1 mRNA upstream 17926 17357434 ~ 17369209 (+) False ezh2
XM_036935089.1 mRNA upstream 17926 17357436 ~ 17369209 (+) False ezh2
XM_021620394.2 mRNA upstream 17926 17362840 ~ 17369209 (+) True ezh2
XM_036935093.1 mRNA downstream 56901 17444268 ~ 17446180 (+) False LOC110535414
XM_021620400.2 mRNA downstream 56901 17444268 ~ 17446653 (+) False LOC110535414
XM_036935095.1 mRNA downstream 56901 17444268 ~ 17459118 (+) False LOC110535414
XM_036935094.1 mRNA downstream 56901 17444268 ~ 17464796 (+) False LOC110535414
XR_005034595.1 mRNA downstream 56901 17444268 ~ 17537220 (+) True LOC110535414
TU1081800 other upstream 785243 16554200 ~ 16601892 (+) True G948710
TU1081652 other upstream 841846 16543815 ~ 16545289 (+) False LOC110535387
TU1081649 other upstream 1051843 16333057 ~ 16335292 (+) True LOC110535372
TU1081665 other upstream 1060728 16323350 ~ 16326407 (+) True G948587
TU1081677 other upstream 1176295 16209929 ~ 16210840 (+) False ccl20b
TU1085033 other downstream 1739298 19126665 ~ 19127085 (+) True G951511
TU1086071 other downstream 2373898 19761265 ~ 19769353 (+) False phldb2b
TU1089657 other downstream 5339186 22726553 ~ 22741247 (+) True tlcd4a
TU1090807 other downstream 6277921 23665288 ~ 23665930 (+) True G956728
TU1090885 other downstream 6388405 23775772 ~ 23776845 (+) True G956797

Expression Profile