RNA id: TU1082250


Basic Information

Item Value
RNA id TU1082250
length 237
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G949120
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 17403352 ~ 17403588 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGAACGGTTGCCACGACCTTCCAGGGTCGGTCTGGGATACAGTGCGATAACATTGGCTCTTTGGTGTTTGAGGGGCGTCGTTCAAGACAGGTGGTGCATTTAGCAACAATATCCTCTATTTGTTTGCACATTCCATGCCAAAACAAAATGTCCTGTGCTCCCTGATTTCACTTTTCCATGCCCATGTGTCCAGCATGGATCTTTGTCAAAATCTCTTCTCTGAGACTGGTAGGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1082240 lncRNA upstream 15985 17387135 ~ 17387367 (+) True G949111
TU1082234 lncRNA upstream 43974 17359137 ~ 17359378 (+) True G949105
TU1082232 lncRNA upstream 46948 17356018 ~ 17356404 (+) True G949103
TU1082212 lncRNA upstream 75586 17327472 ~ 17327766 (+) True LOC110536567
TU1082203 lncRNA upstream 90079 17313051 ~ 17313273 (+) True G949087
TU1082268 lncRNA downstream 24902 17428490 ~ 17459732 (+) True G949136
TU1082315 lncRNA downstream 110233 17513821 ~ 17520003 (+) True G949183
TU1082322 lncRNA downstream 113327 17516915 ~ 17518259 (+) True G949186
TU1082391 lncRNA downstream 231390 17634978 ~ 17636793 (+) True G949255
TU1083478 lncRNA downstream 266144 17669732 ~ 17669943 (+) True G950188
XR_005034593.1 mRNA upstream 12293 17386005 ~ 17391059 (+) True LOC118937326
XM_036935091.1 mRNA upstream 34143 17356706 ~ 17369209 (+) False ezh2
XM_036935093.1 mRNA downstream 40680 17444268 ~ 17446180 (+) False LOC110535414
XM_021620400.2 mRNA downstream 40680 17444268 ~ 17446653 (+) False LOC110535414
XM_036935095.1 mRNA downstream 40680 17444268 ~ 17459118 (+) False LOC110535414
XM_036935094.1 mRNA downstream 40680 17444268 ~ 17464796 (+) False LOC110535414
XR_005034595.1 mRNA downstream 40680 17444268 ~ 17537220 (+) True LOC110535414
TU1081800 other upstream 801460 16554200 ~ 16601892 (+) True G948710
TU1081652 other upstream 858063 16543815 ~ 16545289 (+) False LOC110535387
TU1081649 other upstream 1068060 16333057 ~ 16335292 (+) True LOC110535372
TU1081665 other upstream 1076945 16323350 ~ 16326407 (+) True G948587
TU1081677 other upstream 1192512 16209929 ~ 16210840 (+) False ccl20b
TU1085033 other downstream 1723077 19126665 ~ 19127085 (+) True G951511
TU1086071 other downstream 2357677 19761265 ~ 19769353 (+) False phldb2b
TU1089657 other downstream 5322965 22726553 ~ 22741247 (+) True tlcd4a
TU1090807 other downstream 6261700 23665288 ~ 23665930 (+) True G956728
TU1090885 other downstream 6372184 23775772 ~ 23776845 (+) True G956797

Expression Profile