RNA id: TU1083516


Basic Information

Item Value
RNA id TU1083516
length 212
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G950225
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 17689812 ~ 17690023 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTATGGAAGAGGTTCTTTGCAGTGTGCAACGTCTCGAATATACCCAGGAGGCGTTGCCGTCAACTAGCGGAGGATGCTCTACAACCAGTCGACCCAGCAAGCCAGCACAACAGCCCATTCTGCAACTCGCTCAGGTCAGCAATGCCCATTTTTCCCTCCCGGATAAATATGACGGCATCTAAATGCCGGGGCTCCCTACTTTAGTGCTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1083478 lncRNA upstream 19869 17669732 ~ 17669943 (+) True G950188
TU1082391 lncRNA upstream 53019 17634978 ~ 17636793 (+) True G949255
TU1082315 lncRNA upstream 169809 17513821 ~ 17520003 (+) True G949183
TU1082322 lncRNA upstream 171553 17516915 ~ 17518259 (+) True G949186
TU1082268 lncRNA upstream 230080 17428490 ~ 17459732 (+) True G949136
TU1083539 lncRNA downstream 18372 17708395 ~ 17708618 (+) True G950246
TU1083626 lncRNA downstream 139990 17830013 ~ 17830880 (+) True G950317
TU1083604 lncRNA downstream 145275 17835298 ~ 17839157 (+) True G950302
TU1083606 lncRNA downstream 150799 17840822 ~ 17851538 (+) True G950303
TU1083674 lncRNA downstream 211336 17901359 ~ 17901870 (+) True G950347
XR_005034595.1 mRNA upstream 152592 17444268 ~ 17537220 (+) True LOC110535414
XM_036935094.1 mRNA upstream 225016 17444268 ~ 17464796 (+) False LOC110535414
XM_036935095.1 mRNA upstream 230694 17444268 ~ 17459118 (+) False LOC110535414
XM_021620400.2 mRNA upstream 243159 17444268 ~ 17446653 (+) False LOC110535414
XM_036935093.1 mRNA upstream 243632 17444268 ~ 17446180 (+) False LOC110535414
XM_036934625.1 mRNA downstream 19664 17709687 ~ 17789321 (+) False tpk1
XM_036934629.1 mRNA downstream 19664 17709687 ~ 17789321 (+) False tpk1
XM_036934630.1 mRNA downstream 19664 17709687 ~ 17789321 (+) False tpk1
XM_036934632.1 mRNA downstream 19664 17709687 ~ 17789321 (+) False tpk1
XM_036934633.1 mRNA downstream 19664 17709687 ~ 17789321 (+) False tpk1
TU1081800 other upstream 1087920 16554200 ~ 16601892 (+) True G948710
TU1081652 other upstream 1144523 16543815 ~ 16545289 (+) False LOC110535387
TU1081649 other upstream 1354520 16333057 ~ 16335292 (+) True LOC110535372
TU1081665 other upstream 1363405 16323350 ~ 16326407 (+) True G948587
TU1081677 other upstream 1478972 16209929 ~ 16210840 (+) False ccl20b
TU1085033 other downstream 1436642 19126665 ~ 19127085 (+) True G951511
TU1086071 other downstream 2071242 19761265 ~ 19769353 (+) False phldb2b
TU1089657 other downstream 5036530 22726553 ~ 22741247 (+) True tlcd4a
TU1090807 other downstream 5975265 23665288 ~ 23665930 (+) True G956728
TU1090885 other downstream 6085749 23775772 ~ 23776845 (+) True G956797

Expression Profile