RNA id: TU1084686


Basic Information

Item Value
RNA id TU1084686
length 1495
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G951225
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 18562338 ~ 18595492 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cccatagtagtctaccatcctcccatagtagtctaccattctcccataataGTGGactattctcccatagtagtctaccagtctaccattctcccatagtagtctaccattcttccatagtagtctaccattctctgatagtagtctaccatactcccatagtagtctaccattctcccttagtagtctaccatactctcatagaagtctaccattctcccatagtagtttaccatcctcccatagcagtctaccatttTCCCATATTAGTGGactattctcccatagtagtctaacatactcccatagtagtctaccatactctcATAGAAGTCTACCATTATcctatagtagtctaccattctccctttgcagtctaccatactcccatagtagtctaccattctcccatagtagtctaacatactcccatagtagtctaccatactcccatagtagtctaccattctcccatagtagtctaccatactcccatagttgTCTACACTactcccatagcagtctaccattctcccatagtagtgtACCATTCCCCCATAGTAGTTTACCATACTCCCTTAGTAGTGTACCATTCTCCcttagtagtctaccattctcccatagtagtctaccattatcctatagtagtctaccattctccctttgcagtctaccatactcccatagttgTCTACCATACTctcatagtagtctaccattctcccatagtagtttCCCATcctcccatagcagtctaccattctcccatattAGTGGactattctcccatagtagtctaccatcctcccatagtagtctaccattatcctatagtagtctaccattctccctttgcagtctaccatactcccatagtagtctaccattctcccatagtagtctaacatactcccatagtagtctaccatactcccatagtagtctaccattctcccatagtagtctaccatactcccatagtagtctaccattctcccatagtagtctaccatactcccatagttgTCTACACTactcccatagcagtctaccattctcccatagtagtgtACCATTCCCCCATAGTAGTTTACCATACTCCCTTAGTAGTGTACCATTCTCCcttagtagtctaccattctcccatagtagtctaccattctcctatagtagtctaccatactcccataagAGTGCactattctcccatagtagtctaccatactcccatagtagcctaccattctcccatagtagtttaCCATTATcctatagtagtctaccattctcccttTGTAGTCTACTATCCTCCCATAGTAGtttaccattctcccatagtagtctactaTTCTcctatagtagtctaccattctcccattgTTGTCTACGATCCTCCCATAGTAGTGTACCATTATCCCTTAGTAGTCTCCCATtctcccatagcagtctaccattctcccatagtagtttaCCTTGCTCCCTTAGTAGTGTACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1084684 lncRNA upstream 9241 18579979 ~ 18583372 (+) False G951225
TU1084690 lncRNA upstream 28005 18562338 ~ 18564608 (+) False G951225
TU1084633 lncRNA upstream 66294 18526050 ~ 18526319 (+) True G951184
TU1084580 lncRNA upstream 110847 18481066 ~ 18481766 (+) True G951135
TU1084573 lncRNA upstream 116556 18475726 ~ 18476057 (+) True G951129
TU1084753 lncRNA downstream 54084 18649576 ~ 18677028 (+) True G951270
TU1084761 lncRNA downstream 121937 18717429 ~ 18727093 (+) False G951277
TU1084762 lncRNA downstream 123847 18719339 ~ 18727093 (+) True G951277
TU1084812 lncRNA downstream 202682 18798174 ~ 18802841 (+) True LOC110535429
TU1084851 lncRNA downstream 216916 18812408 ~ 18812766 (+) True G951340
XM_021620411.2 mRNA upstream 388460 18192624 ~ 18204153 (+) False pex2
XM_036935105.1 mRNA upstream 610716 17960186 ~ 17981897 (+) False hnf4g
XM_021620408.2 mRNA upstream 610719 17963626 ~ 17981894 (+) True hnf4g
XM_036935106.1 mRNA upstream 632613 17949434 ~ 17960000 (+) False LOC110535422
XM_021620419.2 mRNA downstream 194678 18790170 ~ 18802871 (+) False LOC110535429
XM_021620415.2 mRNA downstream 194688 18790180 ~ 18802871 (+) False LOC110535429
XM_021620416.2 mRNA downstream 194692 18790184 ~ 18802871 (+) False LOC110535429
XM_021620420.2 mRNA downstream 194697 18790189 ~ 18802871 (+) False LOC110535429
XM_021620418.2 mRNA downstream 194699 18790191 ~ 18802871 (+) False LOC110535429
TU1081800 other upstream 1990721 16554200 ~ 16601892 (+) True G948710
TU1081652 other upstream 2047324 16543815 ~ 16545289 (+) False LOC110535387
TU1081649 other upstream 2257321 16333057 ~ 16335292 (+) True LOC110535372
TU1081665 other upstream 2266206 16323350 ~ 16326407 (+) True G948587
TU1081677 other upstream 2381773 16209929 ~ 16210840 (+) False ccl20b
TU1085033 other downstream 531173 19126665 ~ 19127085 (+) True G951511
TU1086071 other downstream 1165773 19761265 ~ 19769353 (+) False phldb2b
TU1089657 other downstream 4131061 22726553 ~ 22741247 (+) True tlcd4a
TU1090807 other downstream 5069796 23665288 ~ 23665930 (+) True G956728
TU1090885 other downstream 5180280 23775772 ~ 23776845 (+) True G956797

Expression Profile