RNA id: TU1084762


Basic Information

Item Value
RNA id TU1084762
length 7214
lncRNA type read_through
GC content 0.41
exon number 3
gene id G951277
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 18717429 ~ 18727093 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTGCAGCACTGTCTCATTGGTCCATTTAATTTTATTCTGTCTCACCTTTAAGAAACGTACTTGAGTGAGATTGGCTTCTATAAGGAAATCTAATGACTCAAGTTCAGTTTTGGAGATGGTGAGTCTTTTAAGCTTGGGGATTGGGTGAAAGAGCTCTGGGGAGAGGGCATGGAAGAAATTCTGGCTGATATCAAGGGACAACAACTGGGGTGTGTGAATGAATGTGTCAGGGTGCAGGGTCGCAATATGAAGATTCCCTGCTTGGAACTCTGATAACATGTTCAGACCTTCAAGAAAGTTGGAAGGTAGACAAGACTGTCTCATATACTTACTATAATGCTGACTAAATATGTAGAGGTTTTCCAGAGATGACAGGTCAGTGAAGGGTGGTTGTAGTAGTTGTTCATCTTTTTCATATTTGATAGCATTGGAAGCCATATTGAGAGTTTTTAAGCTTCTAAGTCCTTTGAACACAGCACCCCGGATTTCACTTTTACCTATAACATTGTTTAGCAGGACAAGATTTTTAAGTTTGGCCAAACCCACAAAGGCCCCATCATCCAGTGTCTTTATTTCATTGTCATATAAAGCCAAATCCTCAAGTGATCTTAAGCTTTTGAAGTCCTTTGTTCTGATGTTGGTTAGTTTATTGAATCCTAAATCCAAGCTCTTTAAATGTTGCAAACCCTTTGTGAAAGCGTCGCCCACGTTTAGGATTCTGTTCCTTCTAAGTGTCAGGCTATTTAAGGCCCTTAAATCCAGGAAAACACACCCTTCAAGTTTTGAGATTAAATTGTTGTTAAGATAGAGTTTTTCAAGTCTTCTTAGATTGGAGAAATCCGAGCAGCCTAAAGTTTTGATGATGTTGTGGCTGAGATCCAATTTTTTTAATGTGCGGAGATTCCTTGTAGCATTCGGCACAGAAGAGAGGCCATCATAGCCTAGTCTCAGAGTTTTAAGATCTTTTATTGATCGAAAAGCAGCTTCTGACAGGTCAGTAATATTATTACCTGATATGTCCAGGTCAGTCACCTGTGTGCAGGACTGCAGCATCTTGTCAGAGACACTGCTGAAGTTGTTACATTGCAATCGGAGGGTCTTCAGTGTAGGTATGTGGCAGGCTACATTAATGAGGTTATCTTTTCCTATTTTATCCAGCCCCAGAGATGCCAACGAAAAGTTGATGCTCTGGAGCACCGAACCAATCCCCTGTAAAGACATGTGAATGCCACTCAAGTCGAGGCTGCTCACATTACTCAGAAAATACCTGTCCGCTACATCCCATTCCATGCTTCCATTAATGCCACAGAAGGAGAGGTCTAGTTTCTTAAGATAGGGAAAAATATCTGCTGTGACACTGAAGATCTCCAGAGGATTCCTGGATAGATCCAGCTCTGTCAGCCCTATTGACCTATTTGATATTTCCTGTGACTGCAAAGAGTTCAAGCTGTTGTTCCCAATGAACAACTTCAGCAAGCTTGGCAATTGTAAAATGTGCTTCAGCTCCTTGAAACAATGTAGTTTGTTGCTGGTTAAGTTCAGTACCTTCAAGCTGAAGAGTAACTGAAAAGATGAGGAGGCAATACTTGAGATGTGGTTGTTCTCCAATTGTAGTACTGTGAGGTTGTCCAGGCCCTTAAACATTTGGTCTGAGAGGGATGTGAGTTTGTTAAAGGCCAGATTCAGCTGCTCTAGAGCCACCAGGTCTGAAAAAGACCCATTCTCAACATGAGAAATCCTGTTGCTGTACATGATTAACATTTTGAGGATTGTTAGATCTTTGAAGTCCTCCCTTTTTATCTGTGAAATGTTATTCTTTGCTATGTTTACAGATCTCACCAATAATGGGATGTCTGCTGGTACGGCATTGAGGTTCCTGCCGTCACATAGCACAGACGTGTTTAGAGATTCCCTAATTCTGCAGTGTTTCATTGAGTAGCCATTTACTGGATTAAATAGAACCCAGAAATACAGAAGAATGCATAGAAAGAAACTCAACCGAGAATATGTAGACCCATTTCCTTTTCCTGACAAGGTTACTTTCAGTTCCATATTAAGGAGCTTCGTTTCCTTTTTTGGAAGAAAAAGTGTCTTGTCCAGTGAGGTTCTTCTCAAGACTCTTCCTGATGTATTCGACTTATAAGCTACTTGAGATCACACGCAGAAGAGGACATGCTTCTTAGTCTAACAAGGGTTTACAGTAGTTGTAATGTGATCATGGAATACGCAACATTTCACAAATAGTTCCTCAGACAGTCACATGCCATTTTACTTCTGTTCTAAAACCTGCTTCACTTTCCCCATCATTAACCCTTTCAGCTCCTGTAGAACATACGTAGAACTCCCATATTGAGGCCGCATACTAATAGTCAAGGAACATTTCCTGTGTAACTTGCTCCTAGCAGAAGGTTATCAAGGAATAAGAAAACATTGATGAAGGTAttgttagagaggggtaaagataaAGATTTTGTTTGGgtgccaggcaggtattaaccatgccgaaaggaaaataATAGGatagagagagtaccactaccagacccacacacacatcagcagaagagactgcctggAGTGTAGCCTGTTTGCCacatagccagtggagagaaaagagaagacacaccatataaaacacatcacagcacaggaGTAACGCCACCAATAATAACTCACACaataataatggcagagcaatttaaGTTAACGGCAACTTCAGAGAAACAATTTACAAGAAAGGACGCAATCATCAATATCAGaagatttgcaataatctgtattacctaccagtggaggagtgcagagggtatgCATGGGGGGTAGACAAAACAAAATAGTACCACCCCACATCAatacagaaagaaagaaacagtAACACCGATAATCGAGTTAAACATTTTACAAACTCAGCACGCTGAAAATAAACAAGACTTCTGCAGCATTGCACACTACAATCAAACTGCCGCGCCAACCGGGAGCTACCTCCCAGAGTGCCGAAAGAACTatctttttaaaattgtatttatttattattattttttttgccgGAAGAACTACCGTTATTTCCTCCTTTCTGACCTCtgatgcgctcttaaagtggcagcgcaCGGCGAAGGCTCCGTGCAGGATTTCGCCACAGCCTGAACTAGTTGTTATATAACAAACTTCAAATTACCTGGTATGAGGTCACCCAGAGTTGTGCTTTATTAGAATCTGTTATATTGTTTTCACATTTGCTGTAATGTTAAATTCTCATACAGTGGCTCAATACAATAATTTCATTTCAGAGGTGGAGACAGGAGGGGAGTATTGTAgggggacagaggtggagagattgAATGGAAATGGGAtaaagcagggagagaggaggagagggaaggtgaGAGAGGTTTCCAGGAGGAGAAGTGagtatcaaccaatcaatcaaatgtatttataaagccctttttatatcagcagatatcacaaagtgcttatacagaaacccagcctcaaaaccccaaagagcaagcaatgcagatgtagaagcacagtggctaggaaaaacttcctagaaaggcaggaacctaggaagaaacctagagaggaaccaggctgaggggtggccagtcctcttctggctgtgctgggtggagattataagaatgcatggccattaaggccagatcttTCTTCaaaatgttcaaacgttcatagatggtTGTATCgtagtggttgtagagggtgcaacaggtaaGTACCTCAGGAGTTAATGTCAGTCTGCTTTTCATAGCCCAGCATTAGGAAGTCGAGAGATCAGGTgcagtagagagggagaaagagagggagtgagagagagagagatagggtcaAAAACatcaggtccgggacaaggtagctcgtccggtgaacaggtcagggttctatagccgcaggcagaacagttgaaactggagcagcagcacaacaagGTGGACTGGGACAGTCAGGAAtcgtcaggccaggtagtcctgaggcatggtcctagggctcaggtcctccgagagagagagagagcatacttaagttcacacagCACACCAGACAAAACAGGATAATTAtaccagataggacagactgaccctagcctccaGGCACATAGACTATTGGAGCAAAGATACTGGACACAGACAGGGAGCAAACAAAGCAGGCTTCTAATTATtcttctataaaatatattcaatcCCCATCTCAGGGCTCACTTTCTGATCCAAGGGAAATTAATGCAACATTTTAGTCTTTTTACCAAGAGTTATAAAATACTATATCCAATTTGAGCCAGACAAATGTAAGCAGTTTTAAGAATCTTGATTTGCCCGTATTGGATGAGAAGCAATCTGAGGATCTGGGCCGACCCATCTCATTAGAGGAACTGGAGTCAGCACTGAAAGGTGCTAAAAAGGGTAAATCACCTGGCCCGGATGGGCATTTTAAGAACAGTATTATTAGAGTCAATTCATTCGGCCATCGACAAGGATTTTTTTCCATGAGCATATTAACTCTGCATGAATCTCTCTACTGCCATAGAAAGGGAAAAAACACACAGATTGTGTTAATTACCATCTGATATCTCGACTTAATCCTGACCAAAAATTGTATTGAAAAGTATACTTTTCCGTCCGTAAGTTGATTCACATGGACCAGTCAGGTTTTAAGAAAGGCCGCCTTGCAGCTGACAATGTCCGTTGAGTAATGCAGGTAATACATGAAACACAACAGCAGGACACACTGTGTGCGCTGCTGTCTCTAGATGCCGAGAAGGATTTTGACAGGCTTGAATGGCAGTACTTGTGGGCTACCTTGGAGAAATTTGGTTTGGGAAAGAATTTTATCGATATGGTTTGTGTTTTATATGCTAACCCTGTTGCTATGGTTTCTACTAAGGGCGTGCGCTCAAGTTCATTCCCTATTTTCCGGGGATGTAGACAAGTAGACGGCCTTTCCCCAACTATATTAATTATGTCGCTACAGTCGTCAGCACTACATCTAAGGCAGAATGTAGTTGCTTCTCCAACACTGATTAAATCTTCCTCTCATATCATATCACTCACTATATGCGGATGATATTCTCCTCGTAacggaggggaggagtgggactAGACGGGACACTCATATATATGACAGATATCTAGAATTCAATCTCATATTTATTATCCACATTTGAAGAATTCAAATTGCTGCCCGGGTATAAAATAACTTGGACAAAATCAGCATTAATGTTAGTGAATGAGGCGGCCAAGGAACTTTCACTTCCCTCAACACTTCCCATGAAAACACAGTCCACTTATTTGGGTAGTAGTATACAAACATCCCTGCATGGTCGGGTGAAGTTTAATTATGAGAAAATGTACAAGGAGGTTGAACGAGATTGAACCGTTTTGGAGAAGTTGCCTGCTTCTTTACAAACTAGGGTCGCTACCATAAAGGTGAATGTGTTGCCACGTATCAGTTTCCTGAGCATGATGATCCCGATCCCTCCACCTGTAGGCTATTGGGGAAGGATTGATAAATCCTTGGTAAATACCTTTGGAATGGCAAACATCCGAAGATTAGGTTTGAGGTGTAACAATGACAGAAGTGTCATGGTGGACTTGCATTAAAACATTTTGGTATTTACCACCAATCTCTCCAATTACGCCCACTTAGATCATGGTTTGATCAGTCTACATCATACTCTTGGAGAACTATTGAAGAATAACTTTTTTCACCTACTAGATTGCAGGATGTGTTATATTCTGGTATATCTAATAAGAAATGCATGCTGTATTTTGGTCCTATGAATTCTAATACAACACAGAATTTTAGGAAGGTTGAGAAGTGTGTAGGTGTTAACTGTAAATGGCACCTCCAAACCCCTCTATGGCATAACAAGGCTATTACTTCCGGTAATAAAGCTTTTGAGTCTAGAGCCTGTTCTGCAAAAGGGGTCAATAATCTAGGGGATATATTCGAACTCAAAAGGGTGTTCTTAGTTTTCAGGAACTTCGTCTTCATTTTGATTTGCAAGGGTCATCATTCTTTCTATATCCTACGGTCAGCACTTCGTGCCTATGGGGTACCATGAGGTACACGTTTGGGAAGGCACCCAGTGATAGAGTGGATATTTACATTCCAGTCCAGAGGTTTAGTCTGCTATTAATGCTCATCTCAACGATTAAAGCAGAAAGATCTTTCAATGGTTAAAGCATGGGTAAATGATTTGACTGTTGATGTTGAAGCTATTGATTTGGCGAATATCCGGGAGAATATATTTCACTCAAATAACCCGAACAAATACTTAATTTAAAACAAACTTTGTCAGAGATCTTACTGGACCCCGCTTGTAAGATTTCATGCAAAACAGGCTCAAAGCCCATACTTTACCTATGGAAAGTAGCCGCCTCAAATCTCTAAACTGTTGGATGTGATGTAAAATGCTTACTTGATATTGTTGTATTAGCAAATAACTTTGCTGTATATATTCTAGTGTAGCGCTTGTTAAATGTAGTGTAGCGCAGTATGTTTGAAATGGGTAGGAAGGTGTTTAAGTACAAAAAAAAGGGGGGAACATTTTCATTTTATGTTTATGATTGGGTCACCAGGGCAATTCAAAGACAATTGTTCACCAAAAAAAAGCTAAAAACAACAACCAATAGTTAACAAACTAGGTTAATAGAAATCAACACATGTAACTAAGCAAGTGTAGGCCTATTAAGTTCTTAGAATGACTAACATTAACAAATGCTAATTCTAAATCAGTCATTTAATATATAGAATTAATGTTTAAAAGTAAAACcaaaaatataatataaaatcAGAGCAGGACAGTTTTCAATGTCCCCGTCTCTCCACCCCGGTGAGAATGGTGTCATGGAGATAAGCCAGGAAGAGGTAGTAGGCATATACCACCTGCCACCTCAGGAGATGATAGATAAAGGACCCCAGCAGGGTGAGGAGGACCAGAGAAGGGGTTGAGATGAAGTAGAAGATGCCTAGGTCCACTGAACAGGAGTGGGTGTCCAGGTCCAACAGTTTAGTGTTCTTGAGATCGTCTGGATAGCTACATGGATAGTCATGGGCATAAGCAACTTGTGTTTGGTTGTTGCTCTCAGCCCAATGAACAAACCAAGCATTTCTGCAGTCACAAATGAAAGGATTCCTTTGCATATCCAGGAGAGTTAAGGCTGGGAGAGAGTGCAGCACTGTCTCATTGGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1084753 lncRNA upstream 42311 18649576 ~ 18677028 (+) True G951270
TU1084692 lncRNA upstream 123847 18562338 ~ 18595492 (+) False G951225
TU1084812 lncRNA downstream 71081 18798174 ~ 18802841 (+) True LOC110535429
TU1084851 lncRNA downstream 85315 18812408 ~ 18812766 (+) True G951340
TU1084845 lncRNA downstream 118263 18845356 ~ 18845789 (+) True G951335
TU1084867 lncRNA downstream 119079 18846172 ~ 18846434 (+) True G951352
TU1084868 lncRNA downstream 119878 18846971 ~ 18847197 (+) True G951353
XM_021620411.2 mRNA upstream 515186 18192624 ~ 18204153 (+) False pex2
XM_036935105.1 mRNA upstream 737442 17960186 ~ 17981897 (+) False hnf4g
XM_021620408.2 mRNA upstream 737445 17963626 ~ 17981894 (+) True hnf4g
XM_036935106.1 mRNA upstream 759339 17949434 ~ 17960000 (+) False LOC110535422
XM_021620419.2 mRNA downstream 63077 18790170 ~ 18802871 (+) False LOC110535429
XM_021620415.2 mRNA downstream 63087 18790180 ~ 18802871 (+) False LOC110535429
XM_021620416.2 mRNA downstream 63091 18790184 ~ 18802871 (+) False LOC110535429
XM_021620420.2 mRNA downstream 63096 18790189 ~ 18802871 (+) False LOC110535429
XM_021620418.2 mRNA downstream 63098 18790191 ~ 18802871 (+) False LOC110535429
TU1081800 other upstream 2117447 16554200 ~ 16601892 (+) True G948710
TU1081652 other upstream 2174050 16543815 ~ 16545289 (+) False LOC110535387
TU1081649 other upstream 2384047 16333057 ~ 16335292 (+) True LOC110535372
TU1081665 other upstream 2392932 16323350 ~ 16326407 (+) True G948587
TU1081677 other upstream 2508499 16209929 ~ 16210840 (+) False ccl20b
TU1085033 other downstream 399572 19126665 ~ 19127085 (+) True G951511
TU1086071 other downstream 1034172 19761265 ~ 19769353 (+) False phldb2b
TU1089657 other downstream 3999460 22726553 ~ 22741247 (+) True tlcd4a
TU1090807 other downstream 4938195 23665288 ~ 23665930 (+) True G956728
TU1090885 other downstream 5048679 23775772 ~ 23776845 (+) True G956797

Expression Profile