RNA id: TU1084845


Basic Information

Item Value
RNA id TU1084845
length 434
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G951335
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 18845356 ~ 18845789 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggaaggagacgccttctgtctcctagagatgaacgtactttggtgtgaaaagtgcaaatcaatcccagaacaacagcaaaggaccttgtgacattttaaattcttaaaataaagtggggatcctaactgacctacgacagggcatttttctaggattaaatatcaggaattgtaaagaactgagtttaaatgtatttcgctaaggtgtatgtaaacttccgacttcaactaaaAATACAGTTGATGTGTGAACAAGTGTACTCTTCTCTCAGGAACCCACACTGTTTTACAGATTCACGAAATGTTTACAACActattggtttgtttgtttgagtGGTGATGGAACCACAAGGGGACCAAAAATATCCAGGCCAAATATTCTACAGAATTCTTGTTTTATGGTGAATAAAACCCAAACTGTTTTACAAgctct

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1084851 lncRNA upstream 32590 18812408 ~ 18812766 (+) True G951340
TU1084812 lncRNA upstream 42515 18798174 ~ 18802841 (+) True LOC110535429
TU1084761 lncRNA upstream 118263 18717429 ~ 18727093 (+) False G951277
TU1084762 lncRNA upstream 118263 18719339 ~ 18727093 (+) True G951277
TU1084753 lncRNA upstream 168328 18649576 ~ 18677028 (+) True G951270
TU1084867 lncRNA downstream 383 18846172 ~ 18846434 (+) True G951352
TU1084868 lncRNA downstream 1182 18846971 ~ 18847197 (+) True G951353
TU1084880 lncRNA downstream 27062 18872851 ~ 18873196 (+) True G951362
TU1084885 lncRNA downstream 34943 18880732 ~ 18880991 (+) True G951367
TU1084886 lncRNA downstream 37195 18882984 ~ 18883263 (+) True G951368
XM_036935118.1 mRNA upstream 465 18822334 ~ 18844891 (+) True ankrd33ba
XM_021620419.2 mRNA upstream 42485 18790170 ~ 18802871 (+) False LOC110535429
XM_021620425.2 mRNA downstream 452790 19298579 ~ 19310732 (+) False LOC110535436
XR_002475252.2 mRNA downstream 484192 19329981 ~ 19335648 (+) False LOC110535438
NM_001160571.1 mRNA downstream 496192 19341981 ~ 19345685 (+) True ssm4
XM_036935124.1 mRNA downstream 531346 19377135 ~ 19385929 (+) False LOC110535439
XM_036935125.1 mRNA downstream 531346 19377135 ~ 19385929 (+) False LOC110535439
TU1081800 other upstream 2243464 16554200 ~ 16601892 (+) True G948710
TU1081652 other upstream 2300067 16543815 ~ 16545289 (+) False LOC110535387
TU1081649 other upstream 2510064 16333057 ~ 16335292 (+) True LOC110535372
TU1081665 other upstream 2518949 16323350 ~ 16326407 (+) True G948587
TU1081677 other upstream 2634516 16209929 ~ 16210840 (+) False ccl20b
TU1085033 other downstream 280876 19126665 ~ 19127085 (+) True G951511
TU1086071 other downstream 915476 19761265 ~ 19769353 (+) False phldb2b
TU1089657 other downstream 3880764 22726553 ~ 22741247 (+) True tlcd4a
TU1090807 other downstream 4819499 23665288 ~ 23665930 (+) True G956728
TU1090885 other downstream 4929983 23775772 ~ 23776845 (+) True G956797

Expression Profile