RNA id: TU1084867


Basic Information

Item Value
RNA id TU1084867
length 263
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G951352
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 18846172 ~ 18846434 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGAGACGTGATCACTGATTTAGGAAATTAGCATAAAAACTATTTTATCTGGTCTTTAGTCCTTAAGTATCAGTGCTCATGAGGGAATGGAAAGAAGAGGGCTTGTAGAATATTAGGACATAGTATCAGTAGTACTTTGTGTCGAGCTCACACACAGTTCTGTCCACCCTATCAGATGTCAGATAGCCCTGTGTTTGTGTAAAGAAACATGCAGGCCTTGACCAGAGAGACTGTTGTAACTGCGTTCACAGACaatgttaggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1084845 lncRNA upstream 383 18845356 ~ 18845789 (+) True G951335
TU1084851 lncRNA upstream 33406 18812408 ~ 18812766 (+) True G951340
TU1084812 lncRNA upstream 43331 18798174 ~ 18802841 (+) True LOC110535429
TU1084761 lncRNA upstream 119079 18717429 ~ 18727093 (+) False G951277
TU1084762 lncRNA upstream 119079 18719339 ~ 18727093 (+) True G951277
TU1084868 lncRNA downstream 537 18846971 ~ 18847197 (+) True G951353
TU1084880 lncRNA downstream 26417 18872851 ~ 18873196 (+) True G951362
TU1084885 lncRNA downstream 34298 18880732 ~ 18880991 (+) True G951367
TU1084886 lncRNA downstream 36550 18882984 ~ 18883263 (+) True G951368
TU1084887 lncRNA downstream 39064 18885498 ~ 18885727 (+) True G951369
XM_036935118.1 mRNA upstream 1281 18822334 ~ 18844891 (+) True ankrd33ba
XM_021620415.2 mRNA upstream 43301 18790180 ~ 18802871 (+) False LOC110535429
XM_021620425.2 mRNA downstream 452145 19298579 ~ 19310732 (+) False LOC110535436
XR_002475252.2 mRNA downstream 483547 19329981 ~ 19335648 (+) False LOC110535438
NM_001160571.1 mRNA downstream 495547 19341981 ~ 19345685 (+) True ssm4
XM_036935124.1 mRNA downstream 530701 19377135 ~ 19385929 (+) False LOC110535439
XM_036935125.1 mRNA downstream 530701 19377135 ~ 19385929 (+) False LOC110535439
TU1081800 other upstream 2244280 16554200 ~ 16601892 (+) True G948710
TU1081652 other upstream 2300883 16543815 ~ 16545289 (+) False LOC110535387
TU1081649 other upstream 2510880 16333057 ~ 16335292 (+) True LOC110535372
TU1081665 other upstream 2519765 16323350 ~ 16326407 (+) True G948587
TU1081677 other upstream 2635332 16209929 ~ 16210840 (+) False ccl20b
TU1085033 other downstream 280231 19126665 ~ 19127085 (+) True G951511
TU1086071 other downstream 914831 19761265 ~ 19769353 (+) False phldb2b
TU1089657 other downstream 3880119 22726553 ~ 22741247 (+) True tlcd4a
TU1090807 other downstream 4818854 23665288 ~ 23665930 (+) True G956728
TU1090885 other downstream 4929338 23775772 ~ 23776845 (+) True G956797

Expression Profile