RNA id: TU1085002


Basic Information

Item Value
RNA id TU1085002
length 250
lncRNA type intronic
GC content 0.44
exon number 1
gene id G951480
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 19082083 ~ 19082332 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgtgcttttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctgcagagagtttgctgcactgaaagtaaaggggctgaataattttgcacgccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1084999 lncRNA upstream 7371 19074492 ~ 19074712 (+) True G951477
TU1084995 lncRNA upstream 11411 19070366 ~ 19070672 (+) True G951473
TU1084994 lncRNA upstream 12064 19069808 ~ 19070019 (+) True G951472
TU1084990 lncRNA upstream 19222 19062555 ~ 19062861 (+) True G951468
TU1084987 lncRNA upstream 25571 19056298 ~ 19056512 (+) True G951465
TU1085003 lncRNA downstream 492 19082824 ~ 19083033 (+) True G951481
TU1085005 lncRNA downstream 1546 19083878 ~ 19084081 (+) True G951483
TU1085009 lncRNA downstream 5815 19088147 ~ 19088362 (+) True G951487
TU1085023 lncRNA downstream 28637 19110969 ~ 19111223 (+) True G951501
TU1085024 lncRNA downstream 29288 19111620 ~ 19111831 (+) True G951502
XM_036935118.1 mRNA upstream 237192 18822334 ~ 18844891 (+) True ankrd33ba
XM_021620415.2 mRNA upstream 279212 18790180 ~ 18802871 (+) False LOC110535429
XM_021620425.2 mRNA downstream 216247 19298579 ~ 19310732 (+) False LOC110535436
XR_002475252.2 mRNA downstream 247649 19329981 ~ 19335648 (+) False LOC110535438
NM_001160571.1 mRNA downstream 259649 19341981 ~ 19345685 (+) True ssm4
XM_036935124.1 mRNA downstream 294803 19377135 ~ 19385929 (+) False LOC110535439
XM_036935125.1 mRNA downstream 294803 19377135 ~ 19385929 (+) False LOC110535439
TU1081800 other upstream 2480191 16554200 ~ 16601892 (+) True G948710
TU1081652 other upstream 2536794 16543815 ~ 16545289 (+) False LOC110535387
TU1081649 other upstream 2746791 16333057 ~ 16335292 (+) True LOC110535372
TU1081665 other upstream 2755676 16323350 ~ 16326407 (+) True G948587
TU1081677 other upstream 2871243 16209929 ~ 16210840 (+) False ccl20b
TU1085033 other downstream 44333 19126665 ~ 19127085 (+) True G951511
TU1086071 other downstream 678933 19761265 ~ 19769353 (+) False phldb2b
TU1089657 other downstream 3644221 22726553 ~ 22741247 (+) True tlcd4a
TU1090807 other downstream 4582956 23665288 ~ 23665930 (+) True G956728
TU1090885 other downstream 4693440 23775772 ~ 23776845 (+) True G956797

Expression Profile