RNA id: TCONS_00039742


Basic Information

Item Value
RNA id TCONS_00039742
length 2415
RNA type mRNA
GC content 0.42
exon number 7
gene id XLOC_019921
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 724639 ~ 733339 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cacacacttaataaacacacacttaacacactcactcataaacacacacttaataaacacacacttaacacactcattcataaacacacacttaataaacacacacttaacacactcattcataaacacacacttaacacactcactcataaacacacacttaacacACTCACTCATAAACACACTTAATAACACACACTCATTTTCATGCACTTaatcactcacaaacacactgaacacacactcactcaaaaacacacactcaattacacacactaactcactcacacacataaacacacacacagacggacGGTGACCATGGGCTCGTCTCTCAGTGAGCCCTGCATCTATGATAAGCTGTCGGAGAGCATCGATATCCTCCGTCAGTCCGGCTACCGCTATGGCATGTCGGAGCGCGAGATCGAGAAGTTCATCAAGCAGGTGCTGGAGACCAACGAGCCGCGCAGGGAGCCGCCGCAGTTCCCCATACTCAGGGCCACCGTCAAGTTTGTGGTGGCGGTGGGCGTGGTGCTGATGGCGGTGCTGGTCTTCACGTATCCTCAGTCTCCGGTGCTCATGGGTTCGGTGAGCGGCACCACACTGAACAATTCCTCTCCGCTGAGCCACATTCGCCTGCTGGAGCTGCCCATCGCTGAGAAATACAACCTGCACGGTTTTCATGAGTGGTGGGCATCCAGCAGTCTGCAGTCGATGGATCTGAACTGCTCCGCCTGCGCAGACGTGACCGATATACTGGAGCTCACAGACCAGCTGAGGACATCTgcaggagaacacacacacacacaactactgCTGCtgaagggtggAGCGGCTCTCTCTCTCCGTGTGTCTCAGATGGATCAGTTCTCCTCCGTCTCTCAGACTCCTGCAAACTTCACTCTGCTGTGGAGTGTGTCCTCCAGGCCCAGAGAGTCAGTTCTTCAGTGGTTGTTCCCGGAGTCGGAGCGCTGCCCCCTGCTGGAGATCTGGAGCTCCACACTGCAGCGCTGCAGACTGAGCAGCAGACGCCCACAGCCCTCCAGAGTGCAGGTGTTGGGCTGGATGGTGGTCGCTGACGGATCTCCAGATGTTCGTCTGCTTCCAGTGCAGAGATGCCGAAAACACTGCAGATCCTTCAGTCTGAGGCTGGAGCCCGGGGACATGGTGTTCGCCGACTCGCAGTTCTGGCTAATGGAGCTTTCTCCGTCCGGAGCGCAGGACGTCCAGTGTGACAGTGCGGTGCTTTGAGGAAAAACACTGCTGTGCCAATGAACATTCAGATCTCAGGTGTCCAGACTGCGTTCAGGAAATGACATCGGCCTTGGTTTTTTCTTCATGGGGACACAATTCTGTTTCTGTTGAGCTTCTGTGATGTTTGCTGGTCTTCTGTCTGGATGAGCCGCGGGAACGGTCGTGTTTCAGCCCAAAGCTGGTGTTGTGGAAATGATATTTTGCTTAAAGACAGACACTTTAGTACAGTCTCACGCGATGTTCATGACGATTAAGCTCATTTTGTCCTACTGTGATGCAAAAGAAATCATTTTCGTTACAGACTGCTAAAACATTCTCATTACCGTAAtgcaaaacatttacattttgctgtactgattaaatattaatataagagTTTCATATTAGGTTAATGAGAGTATTTTCGTTTGATTACAATGATAAACTGATTTTCTGtgatttgttgtttctaaattgTAGTcaagaattgtatttattttgtaagaTGGTAATGAGTGTGTATTTACCAATATGGAGACTATTTCGCTGTATTACAGTGacgttttttttgttaatttttcatCATATAGGCATTTTTTGATGGCAGTAATGAGAATAGTTTTTTGGTGTATCACTTAAACGAGAAGGGTAATTTTACTTAATTATGTTatggtaaatgtttattttgtgtagcggtaatgataatatttttccatgacggcaatgaaaataataatttcttgctGTATTGTGGTAATGAAAACAGtggtttttgtttaaaatattttccatattatggtaaatgtttattttctgtaatggtaatgataatatttttacaaaaataatgagaataatatATTGGTGCGTTACGGTAATGAGAAGAATACGTTTAGTTataaaatatttccattttatgGTAAATAcgtttattttgtgttgtgttcaTGAAAATATTTTCATGACGGTAATCAgactaataatttatttttcattatggtAATGAGGAAAATAATTTTGACCAAAATATTTTCCATGTTAtcgtaaatgtttattttgtgtagCGTAATGATCTTATTTTTCCACAATGGTAATTTTTTTGCTGTATTACAGTAATGAGAATGATCATTTTAGTTTAGAATATTTTCCATTTtatagtaaatgtttattttgtgcaGCGGA

Function

GO:

id name namespace
GO:0045787 positive regulation of cell cycle biological_process
GO:0050673 epithelial cell proliferation biological_process
GO:1901727 positive regulation of histone deacetylase activity biological_process
GO:0042060 wound healing biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0030496 midbody cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005730 nucleolus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070410-51 Predicted to be involved in several processes, including epithelial cell proliferation; positive regulation of histone deacetylase activity; and wound healing. Predicted to be located in midbody and plasma membrane. Predicted to be active in Golgi membrane and nucleolus. Orthologous to human C6orf89 (chromosome 6 open reading frame 89).

Ensembl:

ensembl_id ENSDART00000105323

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039739 lncRNA upstream 60785 662103 ~ 663854 (+) True XLOC_019919
TCONS_00042005 lncRNA upstream 415435 240168 ~ 309204 (+) True XLOC_019910
TCONS_00042004 lncRNA upstream 437450 219167 ~ 287189 (+) True XLOC_019909
TCONS_00042002 lncRNA upstream 664271 51545 ~ 60368 (+) True XLOC_019902
TCONS_00042006 lncRNA downstream 70165 803504 ~ 808457 (+) False XLOC_019923
TCONS_00039751 lncRNA downstream 74114 807453 ~ 808457 (+) True XLOC_019923
TCONS_00042007 lncRNA downstream 78261 811600 ~ 817627 (+) True XLOC_019924
TCONS_00042008 lncRNA downstream 190172 923511 ~ 938827 (+) True XLOC_019927
TCONS_00039763 lncRNA downstream 322379 1055718 ~ 1058553 (+) False XLOC_019931
TCONS_00039740 mRNA upstream 23534 696931 ~ 701105 (+) False XLOC_019920
TCONS_00039741 mRNA upstream 23534 697024 ~ 701105 (+) True XLOC_019920
TCONS_00039738 mRNA upstream 59268 661711 ~ 665371 (+) False XLOC_019919
TCONS_00039737 mRNA upstream 59500 661505 ~ 665139 (+) False XLOC_019919
TCONS_00039736 mRNA upstream 87084 635813 ~ 637555 (+) True XLOC_019918
TCONS_00039743 mRNA downstream 3872 737211 ~ 753392 (+) True XLOC_019922
TCONS_00039744 mRNA downstream 53217 786556 ~ 808881 (+) False XLOC_019923
TCONS_00039746 mRNA downstream 56456 789795 ~ 809282 (+) False XLOC_019923
TCONS_00039745 mRNA downstream 56456 789795 ~ 809282 (+) False XLOC_019923
TCONS_00039748 mRNA downstream 56489 789828 ~ 807858 (+) False XLOC_019923
TCONS_00039750 other downstream 70165 803504 ~ 807514 (+) False XLOC_019923
TCONS_00039759 other downstream 285262 1018601 ~ 1019152 (+) True XLOC_019929
TCONS_00039761 other downstream 306209 1039548 ~ 1039749 (+) True XLOC_019930
TCONS_00039775 other downstream 516449 1249788 ~ 1262272 (+) False XLOC_019938
TCONS_00039776 other downstream 516900 1250239 ~ 1251660 (+) False XLOC_019938

Expression Profile

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