RNA id: TU1085090


Basic Information

Item Value
RNA id TU1085090
length 215
lncRNA type intronic
GC content 0.46
exon number 1
gene id G951568
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 19215329 ~ 19215543 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttataagcttcctggTTAGATTCCCGcaacttgaaagcggcagctctaacctttagctcagtgcgaatgttgtatgtaatccatggcttctggttggggtatgtacgaacagtcactgtggggacgacgtttaCGATGCACttgttgataaagccagtgactgatgtgatgtactcctcaatgccatctgaagaattccggaacatattccagt

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1085087 lncRNA upstream 7442 19207652 ~ 19207887 (+) True G951565
TU1085085 lncRNA upstream 11322 19203757 ~ 19204007 (+) True G951563
TU1085082 lncRNA upstream 14929 19200166 ~ 19200400 (+) True G951560
TU1085078 lncRNA upstream 19672 19195438 ~ 19195657 (+) True G951556
TU1085077 lncRNA upstream 20623 19194437 ~ 19194706 (+) True G951555
TU1085099 lncRNA downstream 10858 19226401 ~ 19226616 (+) True G951577
TU1085104 lncRNA downstream 16356 19231899 ~ 19232175 (+) True G951582
TU1085109 lncRNA downstream 22333 19237876 ~ 19238170 (+) True G951587
TU1085127 lncRNA downstream 47370 19262913 ~ 19263189 (+) True G951603
TU1085129 lncRNA downstream 48809 19264352 ~ 19264573 (+) True G951605
XM_036935118.1 mRNA upstream 370438 18822334 ~ 18844891 (+) True ankrd33ba
XM_021620415.2 mRNA upstream 412458 18790180 ~ 18802871 (+) False LOC110535429
XM_021620425.2 mRNA downstream 83036 19298579 ~ 19310732 (+) False LOC110535436
XR_002475252.2 mRNA downstream 114438 19329981 ~ 19335648 (+) False LOC110535438
NM_001160571.1 mRNA downstream 126438 19341981 ~ 19345685 (+) True ssm4
XM_036935124.1 mRNA downstream 161592 19377135 ~ 19385929 (+) False LOC110535439
XM_036935125.1 mRNA downstream 161592 19377135 ~ 19385929 (+) False LOC110535439
TU1085033 other upstream 88244 19126665 ~ 19127085 (+) True G951511
TU1081800 other upstream 2613437 16554200 ~ 16601892 (+) True G948710
TU1081652 other upstream 2670040 16543815 ~ 16545289 (+) False LOC110535387
TU1081649 other upstream 2880037 16333057 ~ 16335292 (+) True LOC110535372
TU1081665 other upstream 2888922 16323350 ~ 16326407 (+) True G948587
TU1086071 other downstream 545722 19761265 ~ 19769353 (+) False phldb2b
TU1089657 other downstream 3511010 22726553 ~ 22741247 (+) True tlcd4a
TU1090807 other downstream 4449745 23665288 ~ 23665930 (+) True G956728
TU1090885 other downstream 4560229 23775772 ~ 23776845 (+) True G956797
TU1092128 other downstream 5384928 24600471 ~ 24601653 (+) True G957942

Expression Profile