RNA id: TU1085127


Basic Information

Item Value
RNA id TU1085127
length 277
lncRNA type intronic
GC content 0.41
exon number 1
gene id G951603
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 19262913 ~ 19263189 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttctacattgtagaatagtgaacaCATCAGAACTACAAAagaacacaaatggaatcatgtagtaaccaaaaaagtgtcatctgatgcagcgctccatcactctccttcttggtcaaatagcccttacacagcctgtaagtgtgttgggtcattatcctgttgaaaaacaaatgacagtcccactaagcacaaaccagatgggatggtgtatcactgcagaatgctgcggtggttaagtgtgccttgaattataaataaatcacagacggtgtcacc

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1085109 lncRNA upstream 24743 19237876 ~ 19238170 (+) True G951587
TU1085104 lncRNA upstream 30738 19231899 ~ 19232175 (+) True G951582
TU1085099 lncRNA upstream 36297 19226401 ~ 19226616 (+) True G951577
TU1085090 lncRNA upstream 47370 19215329 ~ 19215543 (+) True G951568
TU1085087 lncRNA upstream 55026 19207652 ~ 19207887 (+) True G951565
TU1085129 lncRNA downstream 1163 19264352 ~ 19264573 (+) True G951605
TU1085134 lncRNA downstream 14018 19277207 ~ 19277408 (+) True G951610
TU1085143 lncRNA downstream 24794 19287983 ~ 19288197 (+) True G951619
TU1085144 lncRNA downstream 25667 19288856 ~ 19289260 (+) True G951620
TU1085145 lncRNA downstream 27275 19290464 ~ 19290685 (+) True G951621
XM_036935118.1 mRNA upstream 418022 18822334 ~ 18844891 (+) True ankrd33ba
XM_021620415.2 mRNA upstream 460042 18790180 ~ 18802871 (+) False LOC110535429
XM_021620425.2 mRNA downstream 35390 19298579 ~ 19310732 (+) False LOC110535436
XR_002475252.2 mRNA downstream 66792 19329981 ~ 19335648 (+) False LOC110535438
NM_001160571.1 mRNA downstream 78792 19341981 ~ 19345685 (+) True ssm4
XM_036935124.1 mRNA downstream 113946 19377135 ~ 19385929 (+) False LOC110535439
XM_036935125.1 mRNA downstream 113946 19377135 ~ 19385929 (+) False LOC110535439
TU1085033 other upstream 135828 19126665 ~ 19127085 (+) True G951511
TU1081800 other upstream 2661021 16554200 ~ 16601892 (+) True G948710
TU1081652 other upstream 2717624 16543815 ~ 16545289 (+) False LOC110535387
TU1081649 other upstream 2927621 16333057 ~ 16335292 (+) True LOC110535372
TU1081665 other upstream 2936506 16323350 ~ 16326407 (+) True G948587
TU1086071 other downstream 498076 19761265 ~ 19769353 (+) False phldb2b
TU1089657 other downstream 3463364 22726553 ~ 22741247 (+) True tlcd4a
TU1090807 other downstream 4402099 23665288 ~ 23665930 (+) True G956728
TU1090885 other downstream 4512583 23775772 ~ 23776845 (+) True G956797
TU1092128 other downstream 5337282 24600471 ~ 24601653 (+) True G957942

Expression Profile