RNA id: TU1085148


Basic Information

Item Value
RNA id TU1085148
length 394
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G951624
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 19294394 ~ 19294787 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCTGGAACTGATGGGCCAATGAAGTATGAGGAaatctcatcacacacacacagtcaatctTGTTTCAAAGACGCATAGAAATGGTCAGCGCTTTCTACGGCGATGATTAATTCAAAGCATTTAAGACACTATATGTAGAACACTATACACATATTAGAGCCTATGTATATGCATAGGCCTATATTTTATCTTTATGTAACTAGGAatgccagttaagaacaaattcttatttacaatgacgtcttaggaacagtggattaactgccttgttcaggggcagaacaacagatttttaccttgtcagctcggggattcgatcttgcaacctttcgggttactagtccaacgctctaaccactaggctacctgccgtcccagtATGAGTATGAGCcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1085147 lncRNA upstream 1668 19292516 ~ 19292726 (+) True G951623
TU1085145 lncRNA upstream 3709 19290464 ~ 19290685 (+) True G951621
TU1085144 lncRNA upstream 5134 19288856 ~ 19289260 (+) True G951620
TU1085143 lncRNA upstream 6197 19287983 ~ 19288197 (+) True G951619
TU1085134 lncRNA upstream 16986 19277207 ~ 19277408 (+) True G951610
TU1085151 lncRNA downstream 2568 19297355 ~ 19297559 (+) True G951627
TU1085613 lncRNA downstream 12651 19307438 ~ 19308292 (+) True LOC110535436
TU1085623 lncRNA downstream 20813 19315600 ~ 19315953 (+) True G952064
TU1085633 lncRNA downstream 35226 19330013 ~ 19335646 (+) False LOC110535438
TU1085634 lncRNA downstream 35226 19330013 ~ 19335646 (+) True LOC110535438
XM_036935118.1 mRNA upstream 449503 18822334 ~ 18844891 (+) True ankrd33ba
XM_021620415.2 mRNA upstream 491523 18790180 ~ 18802871 (+) False LOC110535429
XM_021620425.2 mRNA downstream 3792 19298579 ~ 19310732 (+) False LOC110535436
XR_002475252.2 mRNA downstream 35194 19329981 ~ 19335648 (+) False LOC110535438
NM_001160571.1 mRNA downstream 47194 19341981 ~ 19345685 (+) True ssm4
XM_036935124.1 mRNA downstream 82348 19377135 ~ 19385929 (+) False LOC110535439
XM_036935125.1 mRNA downstream 82348 19377135 ~ 19385929 (+) False LOC110535439
TU1085033 other upstream 167309 19126665 ~ 19127085 (+) True G951511
TU1081800 other upstream 2692502 16554200 ~ 16601892 (+) True G948710
TU1081652 other upstream 2749105 16543815 ~ 16545289 (+) False LOC110535387
TU1081649 other upstream 2959102 16333057 ~ 16335292 (+) True LOC110535372
TU1081665 other upstream 2967987 16323350 ~ 16326407 (+) True G948587
TU1086071 other downstream 466478 19761265 ~ 19769353 (+) False phldb2b
TU1089657 other downstream 3431766 22726553 ~ 22741247 (+) True tlcd4a
TU1090807 other downstream 4370501 23665288 ~ 23665930 (+) True G956728
TU1090885 other downstream 4480985 23775772 ~ 23776845 (+) True G956797
TU1092128 other downstream 5305684 24600471 ~ 24601653 (+) True G957942

Expression Profile